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The map label for this gene is ycjS [C]

Identifier: 158338304

GI number: 158338304

Start: 5262471

End: 5263598

Strand: Direct

Name: ycjS [C]

Synonym: AM1_5200

Alternate gene names: 158338304

Gene position: 5262471-5263598 (Clockwise)

Preceding gene: 158338298

Following gene: 158338305

Centisome position: 80.91

GC content: 50.44

Gene sequence:

>1128_bases
ATGTCAGCTGAACACGCTTCTCAATCTGCAATCGGTGTCGCCATCGTCGGTACTGGGTTTGGTCAAAAGGTTCATATCCC
CGCTTTTCGAGATTTTCCTGGGACCCAGCTCTTGGCGGTATACAACCGAGATGCCGATAAAGCATCTGCGATCGCATCCG
CAAACAACATTCCCTTCGCCTCAAATAACCTAGCTGAAATCCTGGAAAAACCTAATATACAAGGGGTTAGCATCTCAACC
CCTCCCTTCCAACACTACGAGATGGCAGAAATGGTGCTCAACTCCGGCAAACATTTATTCCTGGAAAAACCGACCACCCT
TAACGCAGGGGACGCTCGCAAACTTTATCACCTGATGCAAAAGCAAAACTTGCAGGCAACCCTCAACTTTGAGTTTCGAT
TTGTACCCGCCTGGATGCAGCTCAAAACCTTGCTCACCCAAAACTACGTAGGTCAAACACGACTGATCAAGATCGACTGG
CTCGTCCCAGGGCGGGCTGATCCGAATCGGCCCTGGAGTTGGCATGCTAGCAAAGAATTAGGGGGTGGCTCTCTCGGTGC
ATTGGCCTCCCATACTTTCGATTATGTTGCCTGGCTTTTTGGTCCAGTAAAGCGGCTCTGTGCTCGACTGATCACGACAA
TTCCTGCCCGTCCCGATCCGGACAGTGGCAAAGCAAAGCCCGTGGATGCTGATGATACCTGCGTCTTGATGTTGGAGCTA
CAAAATGGATGTACTTGCCAGATTAATATTAGTGCGACGACCTATTCCGGTCGCGGACATTGGGTAGAAATCTATGGCGA
TCGGGGCACCTTAGTTCTCGGTAGCCAAAATCCCAAGGATTATATCCACGGCTTCCAGTTACAAGGGAGTCAGTCTGGTG
CCGAGTTACAAGACCTTCCCATCTCCGATTGGCTGCAATTTAAACAAACCTATCCTGACGGTCGGATTGCTCCAACCATG
AGAGTCGTCGAGCATTGGGTAGAAATGATTCAAAAAGGTCAAGCCACCGCCCCCTCTCTCAAGGAAGGGATCTATTCACA
ACTGCTCATGGACTTGGCTCACCAGTCTCACCAGCAAGCAGCCTGGGTGGATGTTCCTGGCATAGATAGCTTCTTAGCAG
AGTCCTAG

Upstream 100 bases:

>100_bases
CCTAAAGAATCTGGCGAAATCGATTTTATGCATCCAGCTATTCCCTGGCGGTCGGTATGATACGGATTGTGCCAATTTGT
TCATTGCACCTATTAAATCT

Downstream 100 bases:

>100_bases
GTCATTTTTCGGCTGTTTATATATAAATGAGCAGGCACCATCCATGGAGAGGTGTTGGGATGTAAGATAAATTACCCATT
GCAAAGCGAAGTCATAACGA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MSAEHASQSAIGVAIVGTGFGQKVHIPAFRDFPGTQLLAVYNRDADKASAIASANNIPFASNNLAEILEKPNIQGVSIST
PPFQHYEMAEMVLNSGKHLFLEKPTTLNAGDARKLYHLMQKQNLQATLNFEFRFVPAWMQLKTLLTQNYVGQTRLIKIDW
LVPGRADPNRPWSWHASKELGGGSLGALASHTFDYVAWLFGPVKRLCARLITTIPARPDPDSGKAKPVDADDTCVLMLEL
QNGCTCQINISATTYSGRGHWVEIYGDRGTLVLGSQNPKDYIHGFQLQGSQSGAELQDLPISDWLQFKQTYPDGRIAPTM
RVVEHWVEMIQKGQATAPSLKEGIYSQLLMDLAHQSHQQAAWVDVPGIDSFLAES

Sequences:

>Translated_375_residues
MSAEHASQSAIGVAIVGTGFGQKVHIPAFRDFPGTQLLAVYNRDADKASAIASANNIPFASNNLAEILEKPNIQGVSIST
PPFQHYEMAEMVLNSGKHLFLEKPTTLNAGDARKLYHLMQKQNLQATLNFEFRFVPAWMQLKTLLTQNYVGQTRLIKIDW
LVPGRADPNRPWSWHASKELGGGSLGALASHTFDYVAWLFGPVKRLCARLITTIPARPDPDSGKAKPVDADDTCVLMLEL
QNGCTCQINISATTYSGRGHWVEIYGDRGTLVLGSQNPKDYIHGFQLQGSQSGAELQDLPISDWLQFKQTYPDGRIAPTM
RVVEHWVEMIQKGQATAPSLKEGIYSQLLMDLAHQSHQQAAWVDVPGIDSFLAES
>Mature_374_residues
SAEHASQSAIGVAIVGTGFGQKVHIPAFRDFPGTQLLAVYNRDADKASAIASANNIPFASNNLAEILEKPNIQGVSISTP
PFQHYEMAEMVLNSGKHLFLEKPTTLNAGDARKLYHLMQKQNLQATLNFEFRFVPAWMQLKTLLTQNYVGQTRLIKIDWL
VPGRADPNRPWSWHASKELGGGSLGALASHTFDYVAWLFGPVKRLCARLITTIPARPDPDSGKAKPVDADDTCVLMLELQ
NGCTCQINISATTYSGRGHWVEIYGDRGTLVLGSQNPKDYIHGFQLQGSQSGAELQDLPISDWLQFKQTYPDGRIAPTMR
VVEHWVEMIQKGQATAPSLKEGIYSQLLMDLAHQSHQQAAWVDVPGIDSFLAES

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI9506675, Length=374, Percent_Identity=21.9251336898396, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI226371727, Length=370, Percent_Identity=22.972972972973, Blast_Score=89, Evalue=5e-18,
Organism=Escherichia coli, GI1787574, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081947, Length=192, Percent_Identity=26.5625, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323975, Length=301, Percent_Identity=24.5847176079734, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI19920536, Length=367, Percent_Identity=23.9782016348774, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24581117, Length=165, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 41367; Mature: 41236

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAEHASQSAIGVAIVGTGFGQKVHIPAFRDFPGTQLLAVYNRDADKASAIASANNIPFA
CCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCC
SNNLAEILEKPNIQGVSISTPPFQHYEMAEMVLNSGKHLFLEKPTTLNAGDARKLYHLMQ
CCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
KQNLQATLNFEFRFVPAWMQLKTLLTQNYVGQTRLIKIDWLVPGRADPNRPWSWHASKEL
HCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC
GGGSLGALASHTFDYVAWLFGPVKRLCARLITTIPARPDPDSGKAKPVDADDTCVLMLEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEE
QNGCTCQINISATTYSGRGHWVEIYGDRGTLVLGSQNPKDYIHGFQLQGSQSGAELQDLP
CCCCEEEEEEEEEEECCCCCEEEEECCCCEEEECCCCCHHHHCCEEEECCCCCCCCCCCC
ISDWLQFKQTYPDGRIAPTMRVVEHWVEMIQKGQATAPSLKEGIYSQLLMDLAHQSHQQA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
AWVDVPGIDSFLAES
EEEECCCCHHHHCCC
>Mature Secondary Structure 
SAEHASQSAIGVAIVGTGFGQKVHIPAFRDFPGTQLLAVYNRDADKASAIASANNIPFA
CCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCC
SNNLAEILEKPNIQGVSISTPPFQHYEMAEMVLNSGKHLFLEKPTTLNAGDARKLYHLMQ
CCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
KQNLQATLNFEFRFVPAWMQLKTLLTQNYVGQTRLIKIDWLVPGRADPNRPWSWHASKEL
HCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC
GGGSLGALASHTFDYVAWLFGPVKRLCARLITTIPARPDPDSGKAKPVDADDTCVLMLEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEE
QNGCTCQINISATTYSGRGHWVEIYGDRGTLVLGSQNPKDYIHGFQLQGSQSGAELQDLP
CCCCEEEEEEEEEEECCCCCEEEEECCCCEEEECCCCCHHHHCCEEEECCCCCCCCCCCC
ISDWLQFKQTYPDGRIAPTMRVVEHWVEMIQKGQATAPSLKEGIYSQLLMDLAHQSHQQA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
AWVDVPGIDSFLAES
EEEECCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]