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The map label for this gene is yggB [C]

Identifier: 158338168

GI number: 158338168

Start: 5105702

End: 5106604

Strand: Direct

Name: yggB [C]

Synonym: AM1_5060

Alternate gene names: 158338168

Gene position: 5105702-5106604 (Clockwise)

Preceding gene: 158338167

Following gene: 158338169

Centisome position: 78.5

GC content: 42.97

Gene sequence:

>903_bases
ATGTCCGATATTCTTAAGACTATTGAGTCAAGCTTAAATGAGCTGCTAGCAAGTTCAGTCAAGGTTTTCCCAGCGTTGTT
AACGGCTGTCATTGTTTTATTCCTAACCCGATATATGGCGCAATTTGCGCAACGTGTAGTGGGCAAAGCGGGCAAAACTG
CCTTTCGGAGTCATTCTATTCAAATCCTCCTAGAGAAAACGGCCTATGTTATGACCTGGGTGATAGGTGTTGTTTTTGCA
GGGGTACTGGTGTTTCCTGGCCTAGATTTAGGAGATATTATTGCCACTCTAGGTTTAGGTTCTGTCGCGATTGGTTTTGC
GTTTCAAGACATTATCAAAAACTTTTTCGCAGGTATTTTATTACTCCTACAAGAACCCTTCAGTATCAATGACCAAATCA
TTATCGATAGCTTTGAAGGAACCGTTGAGAAAATTAATTTTCGCACCACTCAGATTCGTACATATCAAGGGGAGCGGATT
CTGATCCCTAATGCCAATGTGTTTACCAGTGCAGTCCAGGTGCAAACGGCTTATCCAAGTCGGCGGACGGATCTAGGGGT
TGGGGTTGATTACAATACGCCTCTAGAAGATGCTGCAAGCCTCTTGCAAGATACGATTGAACAGTTAGAGGGAGTGTTGC
CTTCTCCTAGAGTTGAAATTGACTTAGTTGGATTTGGTGACAGCTCGATTGACTTTATCGTTCGCTATTGGACGGAACCT
CAGCAGGCCCAGGTGAGACGAATTCAAACCAAGGCGATTATCGTGATTAAGAAGGCCTTTGACAAAGCGGATATCAATAT
CCCCTATCCTATTCGGACGCTGTATTACTACAACCAAGATAATTACAACGATTACATGCCAACTAACAGGAATAGTAATA
ATCACCAGTTATCCAAGGTTTAG

Upstream 100 bases:

>100_bases
TAGGAAAATTTCAGTAAAGAATTTGAGTGATCCATCATCCATTGCTTCTGAGAAAGTCAGCAGTGTCCCAGAATTTTGTA
GGTAGAAGTCAATCACGATA

Downstream 100 bases:

>100_bases
GTTGTTTACGCCTAATGGTTATTATTTTGAACCCCACATTTATGTGTGGGGTTTTTAGCTGTCTTGAAAACCTGATCCTG
GTTTATGTTCAACTGCAGGA

Product: mechanosensitive ion channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSDILKTIESSLNELLASSVKVFPALLTAVIVLFLTRYMAQFAQRVVGKAGKTAFRSHSIQILLEKTAYVMTWVIGVVFA
GVLVFPGLDLGDIIATLGLGSVAIGFAFQDIIKNFFAGILLLLQEPFSINDQIIIDSFEGTVEKINFRTTQIRTYQGERI
LIPNANVFTSAVQVQTAYPSRRTDLGVGVDYNTPLEDAASLLQDTIEQLEGVLPSPRVEIDLVGFGDSSIDFIVRYWTEP
QQAQVRRIQTKAIIVIKKAFDKADINIPYPIRTLYYYNQDNYNDYMPTNRNSNNHQLSKV

Sequences:

>Translated_300_residues
MSDILKTIESSLNELLASSVKVFPALLTAVIVLFLTRYMAQFAQRVVGKAGKTAFRSHSIQILLEKTAYVMTWVIGVVFA
GVLVFPGLDLGDIIATLGLGSVAIGFAFQDIIKNFFAGILLLLQEPFSINDQIIIDSFEGTVEKINFRTTQIRTYQGERI
LIPNANVFTSAVQVQTAYPSRRTDLGVGVDYNTPLEDAASLLQDTIEQLEGVLPSPRVEIDLVGFGDSSIDFIVRYWTEP
QQAQVRRIQTKAIIVIKKAFDKADINIPYPIRTLYYYNQDNYNDYMPTNRNSNNHQLSKV
>Mature_299_residues
SDILKTIESSLNELLASSVKVFPALLTAVIVLFLTRYMAQFAQRVVGKAGKTAFRSHSIQILLEKTAYVMTWVIGVVFAG
VLVFPGLDLGDIIATLGLGSVAIGFAFQDIIKNFFAGILLLLQEPFSINDQIIIDSFEGTVEKINFRTTQIRTYQGERIL
IPNANVFTSAVQVQTAYPSRRTDLGVGVDYNTPLEDAASLLQDTIEQLEGVLPSPRVEIDLVGFGDSSIDFIVRYWTEPQ
QAQVRRIQTKAIIVIKKAFDKADINIPYPIRTLYYYNQDNYNDYMPTNRNSNNHQLSKV

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=258, Percent_Identity=26.7441860465116, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786670, Length=180, Percent_Identity=28.3333333333333, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787591, Length=226, Percent_Identity=26.9911504424779, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI2367355, Length=206, Percent_Identity=25.2427184466019, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 33554; Mature: 33423

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDILKTIESSLNELLASSVKVFPALLTAVIVLFLTRYMAQFAQRVVGKAGKTAFRSHSI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
QILLEKTAYVMTWVIGVVFAGVLVFPGLDLGDIIATLGLGSVAIGFAFQDIIKNFFAGIL
EEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LLLQEPFSINDQIIIDSFEGTVEKINFRTTQIRTYQGERILIPNANVFTSAVQVQTAYPS
HHHCCCCCCCCEEEEECCCCCHHHEEEEEEEEEEECCCEEEECCCCHHHHHEEEEECCCC
RRTDLGVGVDYNTPLEDAASLLQDTIEQLEGVLPSPRVEIDLVGFGDSSIDFIVRYWTEP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHEEECCCC
QQAQVRRIQTKAIIVIKKAFDKADINIPYPIRTLYYYNQDNYNDYMPTNRNSNNHQLSKV
HHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDILKTIESSLNELLASSVKVFPALLTAVIVLFLTRYMAQFAQRVVGKAGKTAFRSHSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
QILLEKTAYVMTWVIGVVFAGVLVFPGLDLGDIIATLGLGSVAIGFAFQDIIKNFFAGIL
EEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LLLQEPFSINDQIIIDSFEGTVEKINFRTTQIRTYQGERILIPNANVFTSAVQVQTAYPS
HHHCCCCCCCCEEEEECCCCCHHHEEEEEEEEEEECCCEEEECCCCHHHHHEEEEECCCC
RRTDLGVGVDYNTPLEDAASLLQDTIEQLEGVLPSPRVEIDLVGFGDSSIDFIVRYWTEP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHEEECCCC
QQAQVRRIQTKAIIVIKKAFDKADINIPYPIRTLYYYNQDNYNDYMPTNRNSNNHQLSKV
HHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]