Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 158338091

GI number: 158338091

Start: 5026195

End: 5027997

Strand: Reverse

Name: yciR [C]

Synonym: AM1_4981

Alternate gene names: 158338091

Gene position: 5027997-5026195 (Counterclockwise)

Preceding gene: 158338092

Following gene: 158338090

Centisome position: 77.31

GC content: 42.04

Gene sequence:

>1803_bases
ATGTATGCTGGTGGGACTCAAATTTTGATCATTGAGGATGATGACCAAGATGTAGAAATTGTTAGAAAATTGCTGAGTTT
AAACAAAAGCGCAATTACACTCAAACATCGTCGGACACTCTCCACAGGAATTACCTTTCTACATGAAGTTAACTCCATTG
ACTTGGTCTTATTGGATCTTTGTCTATCAGATACCCAGGGTCTAGAAACATTTCATAAGATTCACGAAATGTTCCCCAGT
CTGCCACTGGTTATCCTTTCTGGGAATACAGATGAAACGATAGCTATAGAAGCAATGCAGGATGGGGCTCAAGACTTTTT
AGTCAAAGGACGCTTTAACAGCACTCTTCTATCTCGCACCATTCAATATGCATTAGAAAGACAAAAACAGCAACTAGAGC
TGCAGTATAAAAACACAACATTATTAGCCCTTTCAGAACAACTAGAAATTGCCAATCGTGAACTAGAACGGTTGGCTACC
ATGGATGGGTTAACACGAGTTTATAATCGACGTCAGTTCGATTCTGTCTTTGAACGAGAGTGGCATCGTTTATGTCGTGA
AGAGCAACCGCTATCAGTAATTCTGGGCGATGTCGATCATTTCAAAGCCTATAACGATGCTTATGGCCATCAAGCAGGAG
ACCAGTGTTTACAGCAAGTTGCTCAAGCCATTGCTAGAATTGCCCAACGTCCCGCAGACTGTGTAGCCCGCTACGGGGGC
GAAGAATTTGTAGTGTTGCTCCCTAACACGGATCTTTCTGGGGCATTACACGTTGCAGAAGCAATTCGGGAAGAAGTTGA
GGAACTCAACATTCCCCACCGCAATTCATCAGTGAGTAAGCACATCAGCCTCAGTTTGGGAGTTGCCAGCCTAATACCAA
ACGAAGACATTCCCGCTTCAAGCCTGATTCAATCTGCAGATCAAGCCTTGTATACAGCTAAGGATCTTGGTCGAAACCAG
GTCACCGCAAACACATCTGATTCTACAAATCCCAGACAACTAGCCAACCAAACATTATTGTGGACCCGGAGGATAGAGCA
AGCCTTGGAAAAAGATTATTTCCAGCTCTATGCTCAACCTATCCACCCCCTCAGCCAAAATCGAGAGAAACAATGTTTTG
AAATTTTACTGCGCCTATGTGATCAACCCAGCACAGTCATAACACCTGGTTTGTTCTTACCCATCGCAGAACAAAATGGC
TATATGAATCGCATCGATCATTGGGTTATTGAGCATCTATTTGCAGATCTCCAGAAAATTAAAGCAACTATGGAGCAAAA
TACTCAATTTTTTATTAATTTATCGGCCAGAAGCTGTAATAATGGACAACTTATAGAATTTTTGCAACAACAGCTCACTC
GTTTCAACTTATATCCAGAAGACTTTTGTTTTGAAATTAGTGAAAGCGTTGCCCTGAAGAACATAGCCAATGCAGCCAAA
CTCAGTAACGAGTTAAACGCAATCGGCTGTCAAGTTGCCCTAGATGATTTTGGTAATGGCTTATCTTCTTTCATGCATCT
TAAGTCTATTCCCGCGGACTATCTTAAAATTGATGGCTCCTTTGTCAAAGATATAGGCTCTGATCCAGTGGCTACAGAAA
TTGTCGGAGCCATCCATCGACTTGCAAAAAGTATGGGTATGCAAACAATTGCGGAGTATGTGGAATCTGAGCTTATCCTC
GACACAATATCCAGTTTTGGGATCGATTTTGCTCAAGGTCATTATTATGCCCAAGCCCAACCCCTGATTGAAACCTTAGT
GACTTATCAATCTATTCCATTTCGTCAAGGAGCCGAAAGTTAA

Upstream 100 bases:

>100_bases
GAGGGTAAAGCATAAACAGAATTGCGTACTCCTGCGGTTATTTTCCTCATGATATTGCGTTATACCTTAAGACATTATTA
CGAAATCCAGGTTTATTCCA

Downstream 100 bases:

>100_bases
TCGTTCCATCCGAAATGAGAAGTACCTTACTTCCAAATGCATCAAAAACCGCATAAAACAGAGAATAGGAAGCAGGTCTT
TTTTTATTGAATGTAGATTT

Product: PAS sensor diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 600; Mature: 600

Protein sequence:

>600_residues
MYAGGTQILIIEDDDQDVEIVRKLLSLNKSAITLKHRRTLSTGITFLHEVNSIDLVLLDLCLSDTQGLETFHKIHEMFPS
LPLVILSGNTDETIAIEAMQDGAQDFLVKGRFNSTLLSRTIQYALERQKQQLELQYKNTTLLALSEQLEIANRELERLAT
MDGLTRVYNRRQFDSVFEREWHRLCREEQPLSVILGDVDHFKAYNDAYGHQAGDQCLQQVAQAIARIAQRPADCVARYGG
EEFVVLLPNTDLSGALHVAEAIREEVEELNIPHRNSSVSKHISLSLGVASLIPNEDIPASSLIQSADQALYTAKDLGRNQ
VTANTSDSTNPRQLANQTLLWTRRIEQALEKDYFQLYAQPIHPLSQNREKQCFEILLRLCDQPSTVITPGLFLPIAEQNG
YMNRIDHWVIEHLFADLQKIKATMEQNTQFFINLSARSCNNGQLIEFLQQQLTRFNLYPEDFCFEISESVALKNIANAAK
LSNELNAIGCQVALDDFGNGLSSFMHLKSIPADYLKIDGSFVKDIGSDPVATEIVGAIHRLAKSMGMQTIAEYVESELIL
DTISSFGIDFAQGHYYAQAQPLIETLVTYQSIPFRQGAES

Sequences:

>Translated_600_residues
MYAGGTQILIIEDDDQDVEIVRKLLSLNKSAITLKHRRTLSTGITFLHEVNSIDLVLLDLCLSDTQGLETFHKIHEMFPS
LPLVILSGNTDETIAIEAMQDGAQDFLVKGRFNSTLLSRTIQYALERQKQQLELQYKNTTLLALSEQLEIANRELERLAT
MDGLTRVYNRRQFDSVFEREWHRLCREEQPLSVILGDVDHFKAYNDAYGHQAGDQCLQQVAQAIARIAQRPADCVARYGG
EEFVVLLPNTDLSGALHVAEAIREEVEELNIPHRNSSVSKHISLSLGVASLIPNEDIPASSLIQSADQALYTAKDLGRNQ
VTANTSDSTNPRQLANQTLLWTRRIEQALEKDYFQLYAQPIHPLSQNREKQCFEILLRLCDQPSTVITPGLFLPIAEQNG
YMNRIDHWVIEHLFADLQKIKATMEQNTQFFINLSARSCNNGQLIEFLQQQLTRFNLYPEDFCFEISESVALKNIANAAK
LSNELNAIGCQVALDDFGNGLSSFMHLKSIPADYLKIDGSFVKDIGSDPVATEIVGAIHRLAKSMGMQTIAEYVESELIL
DTISSFGIDFAQGHYYAQAQPLIETLVTYQSIPFRQGAES
>Mature_600_residues
MYAGGTQILIIEDDDQDVEIVRKLLSLNKSAITLKHRRTLSTGITFLHEVNSIDLVLLDLCLSDTQGLETFHKIHEMFPS
LPLVILSGNTDETIAIEAMQDGAQDFLVKGRFNSTLLSRTIQYALERQKQQLELQYKNTTLLALSEQLEIANRELERLAT
MDGLTRVYNRRQFDSVFEREWHRLCREEQPLSVILGDVDHFKAYNDAYGHQAGDQCLQQVAQAIARIAQRPADCVARYGG
EEFVVLLPNTDLSGALHVAEAIREEVEELNIPHRNSSVSKHISLSLGVASLIPNEDIPASSLIQSADQALYTAKDLGRNQ
VTANTSDSTNPRQLANQTLLWTRRIEQALEKDYFQLYAQPIHPLSQNREKQCFEILLRLCDQPSTVITPGLFLPIAEQNG
YMNRIDHWVIEHLFADLQKIKATMEQNTQFFINLSARSCNNGQLIEFLQQQLTRFNLYPEDFCFEISESVALKNIANAAK
LSNELNAIGCQVALDDFGNGLSSFMHLKSIPADYLKIDGSFVKDIGSDPVATEIVGAIHRLAKSMGMQTIAEYVESELIL
DTISSFGIDFAQGHYYAQAQPLIETLVTYQSIPFRQGAES

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=31.1926605504587, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI1788849, Length=255, Percent_Identity=39.6078431372549, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1788381, Length=437, Percent_Identity=26.7734553775744, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=33.6099585062241, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI145693134, Length=221, Percent_Identity=37.10407239819, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI226510982, Length=306, Percent_Identity=31.0457516339869, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI87082007, Length=228, Percent_Identity=38.1578947368421, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI87082096, Length=437, Percent_Identity=25.4004576659039, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI1787262, Length=199, Percent_Identity=34.6733668341709, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI87081921, Length=445, Percent_Identity=23.5955056179775, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=31.9838056680162, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=41.7647058823529, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=27.3809523809524, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=32.5443786982249, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=28.3333333333333, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=27.1186440677966, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=25.4166666666667, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787055, Length=247, Percent_Identity=29.1497975708502, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=35.5029585798817, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=34.7560975609756, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=32.9341317365269, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789650, Length=401, Percent_Identity=22.4438902743142, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787056, Length=166, Percent_Identity=31.9277108433735, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=27.4509803921569, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI87081977, Length=220, Percent_Identity=30.9090909090909, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 67468; Mature: 67468

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAGGTQILIIEDDDQDVEIVRKLLSLNKSAITLKHRRTLSTGITFLHEVNSIDLVLLDL
CCCCCEEEEEEECCCCCHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHCCCHHHHHHHH
CLSDTQGLETFHKIHEMFPSLPLVILSGNTDETIAIEAMQDGAQDFLVKGRFNSTLLSRT
HHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEHHHHCCHHHHEEECCCHHHHHHHH
IQYALERQKQQLELQYKNTTLLALSEQLEIANRELERLATMDGLTRVYNRRQFDSVFERE
HHHHHHHHHHHHHEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WHRLCREEQPLSVILGDVDHFKAYNDAYGHQAGDQCLQQVAQAIARIAQRPADCVARYGG
HHHHCCCCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
EEFVVLLPNTDLSGALHVAEAIREEVEELNIPHRNSSVSKHISLSLGVASLIPNEDIPAS
CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
SLIQSADQALYTAKDLGRNQVTANTSDSTNPRQLANQTLLWTRRIEQALEKDYFQLYAQP
HHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IHPLSQNREKQCFEILLRLCDQPSTVITPGLFLPIAEQNGYMNRIDHWVIEHLFADLQKI
CCCCCCCHHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
KATMEQNTQFFINLSARSCNNGQLIEFLQQQLTRFNLYPEDFCFEISESVALKNIANAAK
HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LSNELNAIGCQVALDDFGNGLSSFMHLKSIPADYLKIDGSFVKDIGSDPVATEIVGAIHR
HHHHHHHHHHEEEHHHHCCHHHHHHHHHHCCHHHHEECCHHHHHCCCCCHHHHHHHHHHH
LAKSMGMQTIAEYVESELILDTISSFGIDFAQGHYYAQAQPLIETLVTYQSIPFRQGAES
HHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MYAGGTQILIIEDDDQDVEIVRKLLSLNKSAITLKHRRTLSTGITFLHEVNSIDLVLLDL
CCCCCEEEEEEECCCCCHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHCCCHHHHHHHH
CLSDTQGLETFHKIHEMFPSLPLVILSGNTDETIAIEAMQDGAQDFLVKGRFNSTLLSRT
HHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEHHHHCCHHHHEEECCCHHHHHHHH
IQYALERQKQQLELQYKNTTLLALSEQLEIANRELERLATMDGLTRVYNRRQFDSVFERE
HHHHHHHHHHHHHEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WHRLCREEQPLSVILGDVDHFKAYNDAYGHQAGDQCLQQVAQAIARIAQRPADCVARYGG
HHHHCCCCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
EEFVVLLPNTDLSGALHVAEAIREEVEELNIPHRNSSVSKHISLSLGVASLIPNEDIPAS
CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
SLIQSADQALYTAKDLGRNQVTANTSDSTNPRQLANQTLLWTRRIEQALEKDYFQLYAQP
HHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IHPLSQNREKQCFEILLRLCDQPSTVITPGLFLPIAEQNGYMNRIDHWVIEHLFADLQKI
CCCCCCCHHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
KATMEQNTQFFINLSARSCNNGQLIEFLQQQLTRFNLYPEDFCFEISESVALKNIANAAK
HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LSNELNAIGCQVALDDFGNGLSSFMHLKSIPADYLKIDGSFVKDIGSDPVATEIVGAIHR
HHHHHHHHHHEEEHHHHCCHHHHHHHHHHCCHHHHEECCHHHHHCCCCCHHHHHHHHHHH
LAKSMGMQTIAEYVESELILDTISSFGIDFAQGHYYAQAQPLIETLVTYQSIPFRQGAES
HHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]