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The map label for this gene is cph2 [H]

Identifier: 158338089

GI number: 158338089

Start: 5023229

End: 5024221

Strand: Direct

Name: cph2 [H]

Synonym: AM1_4979

Alternate gene names: 158338089

Gene position: 5023229-5024221 (Clockwise)

Preceding gene: 158338088

Following gene: 158338096

Centisome position: 77.24

GC content: 42.9

Gene sequence:

>993_bases
GTGCAGATTAGTGATGTCCGGATTTTGATGATTGAAGATGATGAACAGGATGTAGAAATCATCAGAGAATTACTAGAGGG
CCGTCATAGTTTCCCTGCAGCTCTTGAGCATCGAAGTTCACTTGCAGAAGGGATAGCCCGACTCCATCACGAACCTGCCA
TTGACCTTGTGCTTCTTGATCTATCTTTAACGGATGCTAGTAATCTAGAAGCGTTTCAACACATTCAACTTGTGTTCCCA
GAAATGCCCCTCATTATTCTTAGTGGAAATTTAGATCCATCTAGAGCATTATATCTATTGCAGAAAGGTGCACAGGATTG
TCTATTTAAAGGGCATTTTGATGCTACTATCTTACGCTGCTCGATTCAATTTGCTCTAGAAAGGCAGAATCTTTGGTTGG
AGTTAAGAGAAAAGAATAAAATTTTAGAGAAACTTTCTAATGAACTCAAAGTAGCTAACCATAAACTCGAAAAGATTTCA
GCTATAGATAGCTTGACCCACATTAATAATCGACGTCGCTTTGATTCGATATTTCTAGCAGAATGGATTCGAATGATGCG
AGAAAGGCAGCCCCTGTCTCTGATTCTCTGCGATGTCGATCACTTTAAGGCCTATAACGATACCTATGGACATCCTGCGG
GAGATAAGTGTCTACAGCAGGTTGCTCGAGCCATCTCTACGGTTGCCAAGCGTTCTGCAGACTGCGTGGCTCGTTACGGT
GGAGAAGAATTTGTCGTAGTATTACCTAACACCGATCAATCCGGAGCGGTTCATGTTGCCGAAGCCATTAGAACGGAAAT
TGAAGCGCTCAGTATTCCCCATTGTTCTTCCACTGTAAGTCAGTATGTCAGCCTTAGCTTAGGGGTAGCCAGTATCATTC
CCAGCAAAGCAATAGCTCCATCTCAGTTGATTGAGCTGACAGACCAAGCTCTATATATGGCTAAAAAGCGAGGTCGCAAT
CGCACTCACACTATGGAACTGATTCAAACGTAA

Upstream 100 bases:

>100_bases
ACTGTTTGAGTCTTAAAGTGAAAGGAATGGTGAGTAGATAGTTCCTATCGGAAAATTACCCAGCTATATATGTGTCATTT
TTATTAAAGGGGGGAAGATG

Downstream 100 bases:

>100_bases
TTTTTGACTTTGACCTTTACTGGCTGCTGTATTCATGCTTCTAGGGTGAAAGACATGCATCTAAATTAGTAAGCCATCGG
TGAGGGTTGCTACTGATGTA

Product: response regulator receiver modulated diguanylate cyclase protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MQISDVRILMIEDDEQDVEIIRELLEGRHSFPAALEHRSSLAEGIARLHHEPAIDLVLLDLSLTDASNLEAFQHIQLVFP
EMPLIILSGNLDPSRALYLLQKGAQDCLFKGHFDATILRCSIQFALERQNLWLELREKNKILEKLSNELKVANHKLEKIS
AIDSLTHINNRRRFDSIFLAEWIRMMRERQPLSLILCDVDHFKAYNDTYGHPAGDKCLQQVARAISTVAKRSADCVARYG
GEEFVVVLPNTDQSGAVHVAEAIRTEIEALSIPHCSSTVSQYVSLSLGVASIIPSKAIAPSQLIELTDQALYMAKKRGRN
RTHTMELIQT

Sequences:

>Translated_330_residues
MQISDVRILMIEDDEQDVEIIRELLEGRHSFPAALEHRSSLAEGIARLHHEPAIDLVLLDLSLTDASNLEAFQHIQLVFP
EMPLIILSGNLDPSRALYLLQKGAQDCLFKGHFDATILRCSIQFALERQNLWLELREKNKILEKLSNELKVANHKLEKIS
AIDSLTHINNRRRFDSIFLAEWIRMMRERQPLSLILCDVDHFKAYNDTYGHPAGDKCLQQVARAISTVAKRSADCVARYG
GEEFVVVLPNTDQSGAVHVAEAIRTEIEALSIPHCSSTVSQYVSLSLGVASIIPSKAIAPSQLIELTDQALYMAKKRGRN
RTHTMELIQT
>Mature_330_residues
MQISDVRILMIEDDEQDVEIIRELLEGRHSFPAALEHRSSLAEGIARLHHEPAIDLVLLDLSLTDASNLEAFQHIQLVFP
EMPLIILSGNLDPSRALYLLQKGAQDCLFKGHFDATILRCSIQFALERQNLWLELREKNKILEKLSNELKVANHKLEKIS
AIDSLTHINNRRRFDSIFLAEWIRMMRERQPLSLILCDVDHFKAYNDTYGHPAGDKCLQQVARAISTVAKRSADCVARYG
GEEFVVVLPNTDQSGAVHVAEAIRTEIEALSIPHCSSTVSQYVSLSLGVASIIPSKAIAPSQLIELTDQALYMAKKRGRN
RTHTMELIQT

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=37.6543209876543, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=35.3293413173653, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=38.2857142857143, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=32, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI87082007, Length=186, Percent_Identity=36.0215053763441, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787802, Length=143, Percent_Identity=37.7622377622378, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=31.7073170731707, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787541, Length=174, Percent_Identity=31.0344827586207, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=32.2033898305085, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788381, Length=196, Percent_Identity=30.6122448979592, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 37194; Mature: 37194

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQISDVRILMIEDDEQDVEIIRELLEGRHSFPAALEHRSSLAEGIARLHHEPAIDLVLLD
CCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
LSLTDASNLEAFQHIQLVFPEMPLIILSGNLDPSRALYLLQKGAQDCLFKGHFDATILRC
EECCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCHHHHCCCCCCCEEEEE
SIQFALERQNLWLELREKNKILEKLSNELKVANHKLEKISAIDSLTHINNRRRFDSIFLA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
EWIRMMRERQPLSLILCDVDHFKAYNDTYGHPAGDKCLQQVARAISTVAKRSADCVARYG
HHHHHHHCCCCCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GEEFVVVLPNTDQSGAVHVAEAIRTEIEALSIPHCSSTVSQYVSLSLGVASIIPSKAIAP
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
SQLIELTDQALYMAKKRGRNRTHTMELIQT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
>Mature Secondary Structure
MQISDVRILMIEDDEQDVEIIRELLEGRHSFPAALEHRSSLAEGIARLHHEPAIDLVLLD
CCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
LSLTDASNLEAFQHIQLVFPEMPLIILSGNLDPSRALYLLQKGAQDCLFKGHFDATILRC
EECCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCHHHHCCCCCCCEEEEE
SIQFALERQNLWLELREKNKILEKLSNELKVANHKLEKISAIDSLTHINNRRRFDSIFLA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
EWIRMMRERQPLSLILCDVDHFKAYNDTYGHPAGDKCLQQVARAISTVAKRSADCVARYG
HHHHHHHCCCCCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GEEFVVVLPNTDQSGAVHVAEAIRTEIEALSIPHCSSTVSQYVSLSLGVASIIPSKAIAP
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
SQLIELTDQALYMAKKRGRNRTHTMELIQT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]