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The map label for this gene is ctpA [H]

Identifier: 158338082

GI number: 158338082

Start: 5014387

End: 5015679

Strand: Reverse

Name: ctpA [H]

Synonym: AM1_4972

Alternate gene names: 158338082

Gene position: 5015679-5014387 (Counterclockwise)

Preceding gene: 158338083

Following gene: 158338076

Centisome position: 77.12

GC content: 48.88

Gene sequence:

>1293_bases
ATGGCGAATTCAAAAGACGGATTAGTATTAGGAACAACAGCCCTTGTTGGAGCGGGCGTTGTAGTCATTGGTGCAAACCT
TTGGCAGTCCAGCTGGGCAGTGTTCAAAGAAAGTCCGAAAGAAGTGGTGGACGAGGTTTGGCAAGTCATCAATCATGACT
ATGTTGACGCCACTTTCAATGGCAATGATTGGCGCGACATCCGCAACCAGTATTTAAATCGCAACTACACCTCTCGGGAC
GAAGCCTATAAAGCCGTCCGGGAAATGCTAGACAAGCTGGAAGATCCTTACACTCGCTTCATGGATCCAGAGCAATTCAA
AAGTATGCAAATTGATACCTCCGGTGAGCTGACGGGGGTTGGGATTCAAATCACCCAGGATGAAGAGACCAAAGAAATCA
CCGTTATTTCCCCCATTGAAGGGAGTCCAGCCGCCGACGCTGGACTTTTGTCTAAGGATGTCATCATCAAAGTTGACAAC
AAAAGCACCAAAGGAATGGATATTAATGGTGTTGTCAGCTTAATTCGGGGTCCCGTCAACACAGACGTTACCCTCACCGT
TCTGCGGGATAAAGAACAACTCAGTTTCAAGATTAAGCGAGCCCGGATTGAAATTCATCCCGTCCGCTTTTCCAACCAGA
AGAATTCAGCTGGCAATGTGGGCTATATTCGCCTCAATCAGTTCAGCAACAATGCCTCCTCGGAAATGCGCGAAGCGATT
CAAGAGTTGAAGAAACAAAAGGTGGCAGGCTTTATCCTTGACCTGCGTTCGAATCCAGGGGGTCTACTCTACTCCAGTGC
GGAGATCGCCCGCATGTGGATGGGTAAAGGCACCATTGTTTCCACTGTTGACCGGAAAGGTGGTGAAGACAAGCTCACCT
CTGGGAAAAACACCCTCACCGATAAACCTCTCGTCATTCTCGTAGATGGCGGATCAGCCAGCGCCAGCGAAATTTTGGCG
GGTGCCCTGCAGGACAACAAGCGCGCTGTTCTTATTGGCACGAAGACTTTTGGGAAAGGGTTGGTGCAATCCGTACATCC
TTTAGAAGATGGCTCAGGCCTAGCAGTGACCGTTGCCAAATACTTTACCCCTAGCGGTCGAGATATCAATAAAAAAGGAA
TTGAACCGGATATCGAGGTTAAACTCACAGATGATCAGCGAGAAGCCCTCTCGCAGGACCGAGACAAAATTGGTACCCTA
GCCGACCCTCAATATGCCAAAGCCCTGTCTGTGCTCAACGAGAAAATTCTGGCCAATAATAACGGCAATCTGCAATCCTC
CTCTTCCCAGTAG

Upstream 100 bases:

>100_bases
GTAGCCTTCTAGATGCTTGTGCTAGAGTGGGCGTACCTCACTGTCTCTTTGTTGTATAAAAAAAGAGATAGTGCCTCACG
AAACCAATTGGGTTAGGCTT

Downstream 100 bases:

>100_bases
TAATATTGCGGGCAATCTTTCGTTATCCCCCTATGGGAGGTACTGAATCTCTCCCATGGGAATGTCGTAGTGCCAATGCG
GCCCAGTCAAATGAAAGGTC

Product: carboxyl--terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MANSKDGLVLGTTALVGAGVVVIGANLWQSSWAVFKESPKEVVDEVWQVINHDYVDATFNGNDWRDIRNQYLNRNYTSRD
EAYKAVREMLDKLEDPYTRFMDPEQFKSMQIDTSGELTGVGIQITQDEETKEITVISPIEGSPAADAGLLSKDVIIKVDN
KSTKGMDINGVVSLIRGPVNTDVTLTVLRDKEQLSFKIKRARIEIHPVRFSNQKNSAGNVGYIRLNQFSNNASSEMREAI
QELKKQKVAGFILDLRSNPGGLLYSSAEIARMWMGKGTIVSTVDRKGGEDKLTSGKNTLTDKPLVILVDGGSASASEILA
GALQDNKRAVLIGTKTFGKGLVQSVHPLEDGSGLAVTVAKYFTPSGRDINKKGIEPDIEVKLTDDQREALSQDRDKIGTL
ADPQYAKALSVLNEKILANNNGNLQSSSSQ

Sequences:

>Translated_430_residues
MANSKDGLVLGTTALVGAGVVVIGANLWQSSWAVFKESPKEVVDEVWQVINHDYVDATFNGNDWRDIRNQYLNRNYTSRD
EAYKAVREMLDKLEDPYTRFMDPEQFKSMQIDTSGELTGVGIQITQDEETKEITVISPIEGSPAADAGLLSKDVIIKVDN
KSTKGMDINGVVSLIRGPVNTDVTLTVLRDKEQLSFKIKRARIEIHPVRFSNQKNSAGNVGYIRLNQFSNNASSEMREAI
QELKKQKVAGFILDLRSNPGGLLYSSAEIARMWMGKGTIVSTVDRKGGEDKLTSGKNTLTDKPLVILVDGGSASASEILA
GALQDNKRAVLIGTKTFGKGLVQSVHPLEDGSGLAVTVAKYFTPSGRDINKKGIEPDIEVKLTDDQREALSQDRDKIGTL
ADPQYAKALSVLNEKILANNNGNLQSSSSQ
>Mature_429_residues
ANSKDGLVLGTTALVGAGVVVIGANLWQSSWAVFKESPKEVVDEVWQVINHDYVDATFNGNDWRDIRNQYLNRNYTSRDE
AYKAVREMLDKLEDPYTRFMDPEQFKSMQIDTSGELTGVGIQITQDEETKEITVISPIEGSPAADAGLLSKDVIIKVDNK
STKGMDINGVVSLIRGPVNTDVTLTVLRDKEQLSFKIKRARIEIHPVRFSNQKNSAGNVGYIRLNQFSNNASSEMREAIQ
ELKKQKVAGFILDLRSNPGGLLYSSAEIARMWMGKGTIVSTVDRKGGEDKLTSGKNTLTDKPLVILVDGGSASASEILAG
ALQDNKRAVLIGTKTFGKGLVQSVHPLEDGSGLAVTVAKYFTPSGRDINKKGIEPDIEVKLTDDQREALSQDRDKIGTLA
DPQYAKALSVLNEKILANNNGNLQSSSSQ

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=311, Percent_Identity=32.475884244373, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 46979; Mature: 46847

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANSKDGLVLGTTALVGAGVVVIGANLWQSSWAVFKESPKEVVDEVWQVINHDYVDATFN
CCCCCCCEEEECHHHHHCCEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEC
GNDWRDIRNQYLNRNYTSRDEAYKAVREMLDKLEDPYTRFMDPEQFKSMQIDTSGELTGV
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHCEECCCCCCEEEE
GIQITQDEETKEITVISPIEGSPAADAGLLSKDVIIKVDNKSTKGMDINGVVSLIRGPVN
EEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
TDVTLTVLRDKEQLSFKIKRARIEIHPVRFSNQKNSAGNVGYIRLNQFSNNASSEMREAI
CCEEEEEEECCHHHEEEEEEEEEEEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHH
QELKKQKVAGFILDLRSNPGGLLYSSAEIARMWMGKGTIVSTVDRKGGEDKLTSGKNTLT
HHHHHHHHHEEEEEECCCCCCEEECHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC
DKPLVILVDGGSASASEILAGALQDNKRAVLIGTKTFGKGLVQSVHPLEDGSGLAVTVAK
CCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEEE
YFTPSGRDINKKGIEPDIEVKLTDDQREALSQDRDKIGTLADPQYAKALSVLNEKILANN
HCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECC
NGNLQSSSSQ
CCCCCCCCCC
>Mature Secondary Structure 
ANSKDGLVLGTTALVGAGVVVIGANLWQSSWAVFKESPKEVVDEVWQVINHDYVDATFN
CCCCCCEEEECHHHHHCCEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEC
GNDWRDIRNQYLNRNYTSRDEAYKAVREMLDKLEDPYTRFMDPEQFKSMQIDTSGELTGV
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHCEECCCCCCEEEE
GIQITQDEETKEITVISPIEGSPAADAGLLSKDVIIKVDNKSTKGMDINGVVSLIRGPVN
EEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
TDVTLTVLRDKEQLSFKIKRARIEIHPVRFSNQKNSAGNVGYIRLNQFSNNASSEMREAI
CCEEEEEEECCHHHEEEEEEEEEEEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHH
QELKKQKVAGFILDLRSNPGGLLYSSAEIARMWMGKGTIVSTVDRKGGEDKLTSGKNTLT
HHHHHHHHHEEEEEECCCCCCEEECHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC
DKPLVILVDGGSASASEILAGALQDNKRAVLIGTKTFGKGLVQSVHPLEDGSGLAVTVAK
CCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEEE
YFTPSGRDINKKGIEPDIEVKLTDDQREALSQDRDKIGTLADPQYAKALSVLNEKILANN
HCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECC
NGNLQSSSSQ
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]