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The map label for this gene is exbD

Identifier: 158338015

GI number: 158338015

Start: 4950221

End: 4950823

Strand: Reverse

Name: exbD

Synonym: AM1_4902

Alternate gene names: NA

Gene position: 4950823-4950221 (Counterclockwise)

Preceding gene: 158338016

Following gene: 158338013

Centisome position: 76.12

GC content: 51.24

Gene sequence:

>603_bases
ATGAAAACATTTTTAGACAATGAAGATGCAGACATTCAAGTTGAACTAATTCCGCTGTTGGATGTTGTTTTTTGTCTCCT
GGCGGTGTTTATTTTGGGGACGGTAGGTTTGAGTCGCCCCGAAGGGATTAACCTTAATCTTCCCAAGGCAGAAACAGGAA
CGCCCCAATTTAGCAGTAAGTTTAGGGTGCAAGTTGGCATCCTCGGGGAGCTGTTGGCTAATAATCAACCGGTGAATCAA
ACTCAGTTGAAGCAGTTGGTGAGCCGCTATTTGCAAACGACCCCTCAAGGGGTTGTGATTTTGAAGGCGGATGGGGGTGC
TACTTACGACCAGGTGATTACGGTTTTGGATATGCTGCGGTCTGTGGGCGGAGAGCGGGTTGCCTTAGAGACAGTGAAAA
GTGATCCAGTCACCCCTCCCGGTCAGATCCCTGGTCAACCACCCGGTCAAAATGATGTGCTACCCGTGCCGTCTGTGGAT
GGTCCGAATCCAGGATCATTTCCTACGGTGCCCAATCAGCCATCTACGACGACGCCTTTGCCAGGACAACCCCTTGCTCC
TTTGCCGGGGTCTCAACCCCAACCTATTCCGGCTGCACCCTGA

Upstream 100 bases:

>100_bases
ACAGTTTTGGCTGCAGCCCTCCGAAACACGGCCTGCCCTGCCCCCTCAAAACGATTCTCAAGAATAATACTTTGCCTGTT
CAGTGCCAGTTTGAATTCCT

Downstream 100 bases:

>100_bases
GAGATTGCCGTTAGCTCTGAGGCGATAAGGCTTGGTTGAGGGCTTGCAGTTGCTGGGTTGTTCCCATGCAAATCAATAGA
TCTTGGCTGCGAAATTCGGT

Product: biopolymer transport ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MKTFLDNEDADIQVELIPLLDVVFCLLAVFILGTVGLSRPEGINLNLPKAETGTPQFSSKFRVQVGILGELLANNQPVNQ
TQLKQLVSRYLQTTPQGVVILKADGGATYDQVITVLDMLRSVGGERVALETVKSDPVTPPGQIPGQPPGQNDVLPVPSVD
GPNPGSFPTVPNQPSTTTPLPGQPLAPLPGSQPQPIPAAP

Sequences:

>Translated_200_residues
MKTFLDNEDADIQVELIPLLDVVFCLLAVFILGTVGLSRPEGINLNLPKAETGTPQFSSKFRVQVGILGELLANNQPVNQ
TQLKQLVSRYLQTTPQGVVILKADGGATYDQVITVLDMLRSVGGERVALETVKSDPVTPPGQIPGQPPGQNDVLPVPSVD
GPNPGSFPTVPNQPSTTTPLPGQPLAPLPGSQPQPIPAAP
>Mature_200_residues
MKTFLDNEDADIQVELIPLLDVVFCLLAVFILGTVGLSRPEGINLNLPKAETGTPQFSSKFRVQVGILGELLANNQPVNQ
TQLKQLVSRYLQTTPQGVVILKADGGATYDQVITVLDMLRSVGGERVALETVKSDPVTPPGQIPGQPPGQNDVLPVPSVD
GPNPGSFPTVPNQPSTTTPLPGQPLAPLPGSQPQPIPAAP

Specific function: Unknown

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:
GO:0005215: Biopolymer transport ExbD, putative
GO:0006810: Biopolymer transport ExbD, putative
GO:0015031: Biopolymer transport ExbD, putative
GO:0016020: Biopolymer transport ExbD, putative
GO:0016021: Biopolymer transport ExbD, putative

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 21063; Mature: 21063

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFLDNEDADIQVELIPLLDVVFCLLAVFILGTVGLSRPEGINLNLPKAETGTPQFSSK
CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCC
FRVQVGILGELLANNQPVNQTQLKQLVSRYLQTTPQGVVILKADGGATYDQVITVLDMLR
EEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
SVGGERVALETVKSDPVTPPGQIPGQPPGQNDVLPVPSVDGPNPGSFPTVPNQPSTTTPL
HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGQPLAPLPGSQPQPIPAAP
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKTFLDNEDADIQVELIPLLDVVFCLLAVFILGTVGLSRPEGINLNLPKAETGTPQFSSK
CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCC
FRVQVGILGELLANNQPVNQTQLKQLVSRYLQTTPQGVVILKADGGATYDQVITVLDMLR
EEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
SVGGERVALETVKSDPVTPPGQIPGQPPGQNDVLPVPSVDGPNPGSFPTVPNQPSTTTPL
HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGQPLAPLPGSQPQPIPAAP
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]