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The map label for this gene is ctpA [H]

Identifier: 158337962

GI number: 158337962

Start: 4891161

End: 4892483

Strand: Direct

Name: ctpA [H]

Synonym: AM1_4849

Alternate gene names: 158337962

Gene position: 4891161-4892483 (Clockwise)

Preceding gene: 158337961

Following gene: 158337968

Centisome position: 75.21

GC content: 46.79

Gene sequence:

>1323_bases
ATGGTTATTCTTCGACCCCAGGTTGCCCTGCTATCGACTGCCCTCTCAATTGCAACCCTCACAATCGCTTCCCCCACCCC
TAAGACTTGGGCAGCCCCAAACTCCGACTCGTCCAAGGCCATCATTGACGAAGTTTGGCAGATTATCAAAAATGATTATT
TAGATACATCCTTCAATGGTACAGATTGGCCTGCTATTCGCAGCCAATACTTAAACCGTACTTATACCTCCAAAGAAGAA
GTCTATGATGCAGTTCGAGAAATGCTGGACCAACTTGAGGATCCTTATACTCGCTTTTTGGATCCTCAGCAGCTTAAAAA
CATGCAAATCAGTACTTCAGGAGAACTAACAGGTGTTGGGGTACAAATCACCCAGGATGAAAAGACGAAAGACATCACGG
TCATTGCTCCGATTGAAGGCAGTCCTGCCGCCCAAGCAGGGCTCTTAAATCAAGATGTGATCATCCAAGTAGATGACACC
AGCACCGAAGGGATGGATATTAATGAAGCGGTCCAGTTAATTCGAGGTCCCGTTAACTCTATCGTGACCCTCACCGTTTT
ACGGGGTCAGGAGCAGTTGAGTTTTAAGATCAAGCGGGCTCGTATTGAAATTCATCCAGTTCGATTTTCCTCTCAAACGA
GTCCCTCTGGCCCAGTGGGCTATATCCGCCTCAACCAATTTAGCAACAAAGCCACTTCTGAGATGCGCGAAGCCATCCAA
GACTTGGAAAAACAAAAGGTCACTGGATTTGTTCTAGACCTGCGCTTAAACCCCGGTGGATTGCTATATTCCAGCACTGA
AATTGCCCGAATGTGGATGGGGGAAGGTACAATTGTGGCCACTGTGGACCGTGAAGGGGGCGAAGATAAACTCACTTCTG
ATAAAAACACCCTAACGGATAAGCCGCTTATCATCCTGGTGGATGGAGGGTCTGCCAGTGCTAGTGAGATTCTGGCTGGG
GCCTTGCAAGATCACCAACGCGCCGTTTTGCTCGGCACTCAGACGTTTGGCAAAGGACTGGTGCAATCTGTACAGCCTTT
AGAAGATAATTCGGGGTTATCTATAACTGTTGCCAAATACGTGACTCCCAAGGGGCGAGATATTCATAAAAAAGGTATTG
AGCCCGATATCGAAGTAAAACTTACCGATAAGCAACGGAGCGACCTGTTCCAAAACCCAAACAAACTAGGCACAACTTCT
GATCCCCAATATATGAAAGCTGTAGCCGAACTCAATAAGCAAGTTGAAAAACATCGTTGGGACAATGTCACCGTTGCCAC
TCAGTATCTGTGCTCATACCTAACATCCTTGATCGTGAATTAA

Upstream 100 bases:

>100_bases
ATCAGTTTTGACCGGTAGTCAGAGCCATCTCCCTCACCAACTTTAGGGTGATCCAGTCCTAACAATCCCAATATTGACCC
ATCAAACGCTCCTCACACTT

Downstream 100 bases:

>100_bases
GAATGTTTCGATCGCACCCGCTAAATCAGGCAATGCTACTCTCAGCAAAGGCAAGGCATATGATCAATCCCTACCTATAG
GAGAAAAAATTTTGACTATC

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MVILRPQVALLSTALSIATLTIASPTPKTWAAPNSDSSKAIIDEVWQIIKNDYLDTSFNGTDWPAIRSQYLNRTYTSKEE
VYDAVREMLDQLEDPYTRFLDPQQLKNMQISTSGELTGVGVQITQDEKTKDITVIAPIEGSPAAQAGLLNQDVIIQVDDT
STEGMDINEAVQLIRGPVNSIVTLTVLRGQEQLSFKIKRARIEIHPVRFSSQTSPSGPVGYIRLNQFSNKATSEMREAIQ
DLEKQKVTGFVLDLRLNPGGLLYSSTEIARMWMGEGTIVATVDREGGEDKLTSDKNTLTDKPLIILVDGGSASASEILAG
ALQDHQRAVLLGTQTFGKGLVQSVQPLEDNSGLSITVAKYVTPKGRDIHKKGIEPDIEVKLTDKQRSDLFQNPNKLGTTS
DPQYMKAVAELNKQVEKHRWDNVTVATQYLCSYLTSLIVN

Sequences:

>Translated_440_residues
MVILRPQVALLSTALSIATLTIASPTPKTWAAPNSDSSKAIIDEVWQIIKNDYLDTSFNGTDWPAIRSQYLNRTYTSKEE
VYDAVREMLDQLEDPYTRFLDPQQLKNMQISTSGELTGVGVQITQDEKTKDITVIAPIEGSPAAQAGLLNQDVIIQVDDT
STEGMDINEAVQLIRGPVNSIVTLTVLRGQEQLSFKIKRARIEIHPVRFSSQTSPSGPVGYIRLNQFSNKATSEMREAIQ
DLEKQKVTGFVLDLRLNPGGLLYSSTEIARMWMGEGTIVATVDREGGEDKLTSDKNTLTDKPLIILVDGGSASASEILAG
ALQDHQRAVLLGTQTFGKGLVQSVQPLEDNSGLSITVAKYVTPKGRDIHKKGIEPDIEVKLTDKQRSDLFQNPNKLGTTS
DPQYMKAVAELNKQVEKHRWDNVTVATQYLCSYLTSLIVN
>Mature_440_residues
MVILRPQVALLSTALSIATLTIASPTPKTWAAPNSDSSKAIIDEVWQIIKNDYLDTSFNGTDWPAIRSQYLNRTYTSKEE
VYDAVREMLDQLEDPYTRFLDPQQLKNMQISTSGELTGVGVQITQDEKTKDITVIAPIEGSPAAQAGLLNQDVIIQVDDT
STEGMDINEAVQLIRGPVNSIVTLTVLRGQEQLSFKIKRARIEIHPVRFSSQTSPSGPVGYIRLNQFSNKATSEMREAIQ
DLEKQKVTGFVLDLRLNPGGLLYSSTEIARMWMGEGTIVATVDREGGEDKLTSDKNTLTDKPLIILVDGGSASASEILAG
ALQDHQRAVLLGTQTFGKGLVQSVQPLEDNSGLSITVAKYVTPKGRDIHKKGIEPDIEVKLTDKQRSDLFQNPNKLGTTS
DPQYMKAVAELNKQVEKHRWDNVTVATQYLCSYLTSLIVN

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=376, Percent_Identity=30.5851063829787, Blast_Score=134, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 48479; Mature: 48479

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVILRPQVALLSTALSIATLTIASPTPKTWAAPNSDSSKAIIDEVWQIIKNDYLDTSFNG
CEEECCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
TDWPAIRSQYLNRTYTSKEEVYDAVREMLDQLEDPYTRFLDPQQLKNMQISTSGELTGVG
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHCCEEEECCCCEEEEE
VQITQDEKTKDITVIAPIEGSPAAQAGLLNQDVIIQVDDTSTEGMDINEAVQLIRGPVNS
EEEECCCCCCCEEEEEECCCCCCHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCHHH
IVTLTVLRGQEQLSFKIKRARIEIHPVRFSSQTSPSGPVGYIRLNQFSNKATSEMREAIQ
EEEEEEECCCHHHEEEEEEEEEEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
DLEKQKVTGFVLDLRLNPGGLLYSSTEIARMWMGEGTIVATVDREGGEDKLTSDKNTLTD
HHHHHCCEEEEEEEEECCCCEEECCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCC
KPLIILVDGGSASASEILAGALQDHQRAVLLGTQTFGKGLVQSVQPLEDNSGLSITVAKY
CCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCEEEEEEE
VTPKGRDIHKKGIEPDIEVKLTDKQRSDLFQNPNKLGTTSDPQYMKAVAELNKQVEKHRW
ECCCCCCHHHCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
DNVTVATQYLCSYLTSLIVN
CCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVILRPQVALLSTALSIATLTIASPTPKTWAAPNSDSSKAIIDEVWQIIKNDYLDTSFNG
CEEECCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
TDWPAIRSQYLNRTYTSKEEVYDAVREMLDQLEDPYTRFLDPQQLKNMQISTSGELTGVG
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHCCEEEECCCCEEEEE
VQITQDEKTKDITVIAPIEGSPAAQAGLLNQDVIIQVDDTSTEGMDINEAVQLIRGPVNS
EEEECCCCCCCEEEEEECCCCCCHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCHHH
IVTLTVLRGQEQLSFKIKRARIEIHPVRFSSQTSPSGPVGYIRLNQFSNKATSEMREAIQ
EEEEEEECCCHHHEEEEEEEEEEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
DLEKQKVTGFVLDLRLNPGGLLYSSTEIARMWMGEGTIVATVDREGGEDKLTSDKNTLTD
HHHHHCCEEEEEEEEECCCCEEECCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCC
KPLIILVDGGSASASEILAGALQDHQRAVLLGTQTFGKGLVQSVQPLEDNSGLSITVAKY
CCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCEEEEEEE
VTPKGRDIHKKGIEPDIEVKLTDKQRSDLFQNPNKLGTTSDPQYMKAVAELNKQVEKHRW
ECCCCCCHHHCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
DNVTVATQYLCSYLTSLIVN
CCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]