Click here to switch to the map view.

The map label for this gene is yphF [C]

Identifier: 158337957

GI number: 158337957

Start: 4883577

End: 4885685

Strand: Direct

Name: yphF [C]

Synonym: AM1_4844

Alternate gene names: 158337957

Gene position: 4883577-4885685 (Clockwise)

Preceding gene: 158337956

Following gene: 158337959

Centisome position: 75.09

GC content: 46.37

Gene sequence:

>2109_bases
ATGAGTAAAACACCCCCAGGAGAGGACCCCCATCCCCACTATCCAAAGCCAGAGCTGAATCCAACGCTTCTAGAAGAGAA
CGAGGGTCAGCCCTTGGTAGAGAGCTTTCAGCGAGTTAATTTAATCTCCGAAGATTACCTGCGGTTAGCCGTCATTCAAC
AGGAAGCTAGCCAATTTCAGCTTTCTTTAGCCACCTATATTCATCAACTCGAACAATATAATCAGGCGCAACAGTCTACT
AGCCCTCCCAAACCCCCTCTCCTCAAGCCGTTTTCGATTCTGGATGCCAAGGTAAGTGATTTTGTTGCTTGGCTTGAAAT
GATTTCGATCATCAAGCTGGCAACGGTCCTGGGGGAAGCAGCTATTCTCATTGCTTTTATTTCCTATCTTTTCTCTATCC
CTTACCAACAGCAAAAGAAGATAGAAGATGCGCGGAATGTTCTAGTCGATCAAAAGGGGCAACAACATAGTGATGGCAGA
ATAGCGGCCCTCAAAACCCTCGATTCACTCTGCGCGAGTAATGCTGGCCTGCAGGCCCCCAAAGCCCAAATGGTTAAAAT
TCAACTGAATCAATGCCATAAACCCTCGGTCAGTTTCCGTAGTATTCAGCAATGGCCTTTCAAATTTTTCGAGCATCAAG
GGATTGATTTATCCCATGCCAACTTAGAACAAGCCAATCTTGCCCATGCCAATCTCGAAAAAGCTAACTTAAAGGGCAGT
AATTTAAAGGGAATCAACCTGAGTGAAGCTAATCTACAGGGCGCAAATCTGCAAGGGGCCAATTTAGAGGGAGCCAACCT
GGAAGGAGCCAACCTGCAAGGGGCTAACTTTACGGATGCAGTATTGCATAAAAGCTTACTCAATAATGCCAACTTCACGA
AGGCCAATCTAACCCGGGCAAAAATGCACCAGGTTCAAGGAATATGGACCAAATTCAACCATGCAATCCTCCATCGTACT
GATTTATACCAAGCCAACTTGAATCGTTCCATCCTCAAGGGGAGCGATTTGTACAAAGCCAACTTGGAGAATAGCTCCCT
CCAATCGGTAGATTTTTTAGACGATGCCAACTTGCGATCGACGAACTTAAGAAATGCCGATCTCTCTAAAGCTAGCTTTT
GGGCACTCCATCAACTCAAACGGGCCAAGCACTGGCAGTCTGCCATCAAAAGTCCAAATTGGATGCAAACCATTGCCCGT
CCTCGCTCACCTCGCTTACGAATTGGCCTGATCAAATCAGCCGATAGCACGATCTTTAAAGCCTATGAATTGGGGATGCG
GCGGGCTGCCAATCGGCGGGTAGAAATTTGGAGTTTGCTATCCCCCTCCGGGGTTCAAAATGAAGCCCAAACTATTCAGG
AACTGATTGATTCCGGGATTGATGCCATTGTGTTGTCTCCAGAGGATCCATTAGGGTCTATCCCAGCTCTTGAAAAGGCT
TATCAAGCGGGCGTGGTGGTGATCACAGTGGATTTTTGCTTCGATAAAGAAACCGCAAAAGATATGGTGTTTGCCTGTTT
CAACACCAATAGCTTAAAGATGGGAGCCGATTCGGCAGAACACCTCACCCAATGGGCGGCGACCCATCTCCAGGATCAGC
CTTTAAATATTGGTGTGGTGGATAGTGCGGAATATGAACGGTATTATCCCAACTATCAAGGCTTCCTCAACGGCATGGCG
GCTTCCGACGTTACCTGGAAAGAAGTTTCGTCCGTAGATGCAATTACTCAAGCTGACATCGCTCACATTAAAGAAATGCT
ATCGGAGAATCCTCAGATCAATATCCTATGGGGGGGATCCAACTTGGCCACAGAACTGTCTGTGGCAGCAGTGGAAGACT
TAGGATTGCAAGCAAAAGTCAAAGTTTTTGGCATTCTAGATTTATCAAAAGACAAGGCTCGAATGCTGTTAGATCCCAAC
AGTCCTCTACAATCAATCATCGATCAGGCAGGCGTCAAAATCGGCTACAAAGCCGTCCATACCGCTGTGGAAGTTTTAAG
ACACAAAAAAACTCAGTACACTGAATATCCGATAGACCACCGGCTATTGACCCAGACCGATAAAGCGGCTGTCAAAGAGC
TATTAACTGAAGCCAATAGCATTCAGTAA

Upstream 100 bases:

>100_bases
CTTAACCCCTGAAGGATTCAGAACTTTAGACGCTGCAACCTTCAAAGCAATGCTCCAATAACAGGAGGTTAAGTGTGCAT
CCTACTAGACAGTGACGTTG

Downstream 100 bases:

>100_bases
CCCCATTTATGGGCCTCATTCTCAGATGACCTAACTCTTTTGTTGCAACATGGCCTGGTACCTGCCCAAAGCCGTTAAGG
GAAAATGCTGCTGGTAAAGG

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 702; Mature: 701

Protein sequence:

>702_residues
MSKTPPGEDPHPHYPKPELNPTLLEENEGQPLVESFQRVNLISEDYLRLAVIQQEASQFQLSLATYIHQLEQYNQAQQST
SPPKPPLLKPFSILDAKVSDFVAWLEMISIIKLATVLGEAAILIAFISYLFSIPYQQQKKIEDARNVLVDQKGQQHSDGR
IAALKTLDSLCASNAGLQAPKAQMVKIQLNQCHKPSVSFRSIQQWPFKFFEHQGIDLSHANLEQANLAHANLEKANLKGS
NLKGINLSEANLQGANLQGANLEGANLEGANLQGANFTDAVLHKSLLNNANFTKANLTRAKMHQVQGIWTKFNHAILHRT
DLYQANLNRSILKGSDLYKANLENSSLQSVDFLDDANLRSTNLRNADLSKASFWALHQLKRAKHWQSAIKSPNWMQTIAR
PRSPRLRIGLIKSADSTIFKAYELGMRRAANRRVEIWSLLSPSGVQNEAQTIQELIDSGIDAIVLSPEDPLGSIPALEKA
YQAGVVVITVDFCFDKETAKDMVFACFNTNSLKMGADSAEHLTQWAATHLQDQPLNIGVVDSAEYERYYPNYQGFLNGMA
ASDVTWKEVSSVDAITQADIAHIKEMLSENPQINILWGGSNLATELSVAAVEDLGLQAKVKVFGILDLSKDKARMLLDPN
SPLQSIIDQAGVKIGYKAVHTAVEVLRHKKTQYTEYPIDHRLLTQTDKAAVKELLTEANSIQ

Sequences:

>Translated_702_residues
MSKTPPGEDPHPHYPKPELNPTLLEENEGQPLVESFQRVNLISEDYLRLAVIQQEASQFQLSLATYIHQLEQYNQAQQST
SPPKPPLLKPFSILDAKVSDFVAWLEMISIIKLATVLGEAAILIAFISYLFSIPYQQQKKIEDARNVLVDQKGQQHSDGR
IAALKTLDSLCASNAGLQAPKAQMVKIQLNQCHKPSVSFRSIQQWPFKFFEHQGIDLSHANLEQANLAHANLEKANLKGS
NLKGINLSEANLQGANLQGANLEGANLEGANLQGANFTDAVLHKSLLNNANFTKANLTRAKMHQVQGIWTKFNHAILHRT
DLYQANLNRSILKGSDLYKANLENSSLQSVDFLDDANLRSTNLRNADLSKASFWALHQLKRAKHWQSAIKSPNWMQTIAR
PRSPRLRIGLIKSADSTIFKAYELGMRRAANRRVEIWSLLSPSGVQNEAQTIQELIDSGIDAIVLSPEDPLGSIPALEKA
YQAGVVVITVDFCFDKETAKDMVFACFNTNSLKMGADSAEHLTQWAATHLQDQPLNIGVVDSAEYERYYPNYQGFLNGMA
ASDVTWKEVSSVDAITQADIAHIKEMLSENPQINILWGGSNLATELSVAAVEDLGLQAKVKVFGILDLSKDKARMLLDPN
SPLQSIIDQAGVKIGYKAVHTAVEVLRHKKTQYTEYPIDHRLLTQTDKAAVKELLTEANSIQ
>Mature_701_residues
SKTPPGEDPHPHYPKPELNPTLLEENEGQPLVESFQRVNLISEDYLRLAVIQQEASQFQLSLATYIHQLEQYNQAQQSTS
PPKPPLLKPFSILDAKVSDFVAWLEMISIIKLATVLGEAAILIAFISYLFSIPYQQQKKIEDARNVLVDQKGQQHSDGRI
AALKTLDSLCASNAGLQAPKAQMVKIQLNQCHKPSVSFRSIQQWPFKFFEHQGIDLSHANLEQANLAHANLEKANLKGSN
LKGINLSEANLQGANLQGANLEGANLEGANLQGANFTDAVLHKSLLNNANFTKANLTRAKMHQVQGIWTKFNHAILHRTD
LYQANLNRSILKGSDLYKANLENSSLQSVDFLDDANLRSTNLRNADLSKASFWALHQLKRAKHWQSAIKSPNWMQTIARP
RSPRLRIGLIKSADSTIFKAYELGMRRAANRRVEIWSLLSPSGVQNEAQTIQELIDSGIDAIVLSPEDPLGSIPALEKAY
QAGVVVITVDFCFDKETAKDMVFACFNTNSLKMGADSAEHLTQWAATHLQDQPLNIGVVDSAEYERYYPNYQGFLNGMAA
SDVTWKEVSSVDAITQADIAHIKEMLSENPQINILWGGSNLATELSVAAVEDLGLQAKVKVFGILDLSKDKARMLLDPNS
PLQSIIDQAGVKIGYKAVHTAVEVLRHKKTQYTEYPIDHRLLTQTDKAAVKELLTEANSIQ

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yphdef. [C]

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=176, Percent_Identity=33.5227272727273, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221377802, Length=178, Percent_Identity=34.8314606741573, Blast_Score=85, Evalue=2e-16,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 77930; Mature: 77799

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTPPGEDPHPHYPKPELNPTLLEENEGQPLVESFQRVNLISEDYLRLAVIQQEASQFQ
CCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLATYIHQLEQYNQAQQSTSPPKPPLLKPFSILDAKVSDFVAWLEMISIIKLATVLGEA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AILIAFISYLFSIPYQQQKKIEDARNVLVDQKGQQHSDGRIAALKTLDSLCASNAGLQAP
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
KAQMVKIQLNQCHKPSVSFRSIQQWPFKFFEHQGIDLSHANLEQANLAHANLEKANLKGS
CHHEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHCCCCCC
NLKGINLSEANLQGANLQGANLEGANLEGANLQGANFTDAVLHKSLLNNANFTKANLTRA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
KMHQVQGIWTKFNHAILHRTDLYQANLNRSILKGSDLYKANLENSSLQSVDFLDDANLRS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC
TNLRNADLSKASFWALHQLKRAKHWQSAIKSPNWMQTIARPRSPRLRIGLIKSADSTIFK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEEECCCHHHHH
AYELGMRRAANRRVEIWSLLSPSGVQNEAQTIQELIDSGIDAIVLSPEDPLGSIPALEKA
HHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
YQAGVVVITVDFCFDKETAKDMVFACFNTNSLKMGADSAEHLTQWAATHLQDQPLNIGVV
HHCCEEEEEEEECCCCHHHHHHEEEEECCCCEECCCCHHHHHHHHHHHHCCCCCCEEEEE
DSAEYERYYPNYQGFLNGMAASDVTWKEVSSVDAITQADIAHIKEMLSENPQINILWGGS
CCCHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
NLATELSVAAVEDLGLQAKVKVFGILDLSKDKARMLLDPNSPLQSIIDQAGVKIGYKAVH
CCHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCEEEECCCCHHHHHHHHHCCCHHHHHHH
TAVEVLRHKKTQYTEYPIDHRLLTQTDKAAVKELLTEANSIQ
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKTPPGEDPHPHYPKPELNPTLLEENEGQPLVESFQRVNLISEDYLRLAVIQQEASQFQ
CCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLATYIHQLEQYNQAQQSTSPPKPPLLKPFSILDAKVSDFVAWLEMISIIKLATVLGEA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AILIAFISYLFSIPYQQQKKIEDARNVLVDQKGQQHSDGRIAALKTLDSLCASNAGLQAP
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
KAQMVKIQLNQCHKPSVSFRSIQQWPFKFFEHQGIDLSHANLEQANLAHANLEKANLKGS
CHHEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHCCCCCC
NLKGINLSEANLQGANLQGANLEGANLEGANLQGANFTDAVLHKSLLNNANFTKANLTRA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
KMHQVQGIWTKFNHAILHRTDLYQANLNRSILKGSDLYKANLENSSLQSVDFLDDANLRS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC
TNLRNADLSKASFWALHQLKRAKHWQSAIKSPNWMQTIARPRSPRLRIGLIKSADSTIFK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEEECCCHHHHH
AYELGMRRAANRRVEIWSLLSPSGVQNEAQTIQELIDSGIDAIVLSPEDPLGSIPALEKA
HHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
YQAGVVVITVDFCFDKETAKDMVFACFNTNSLKMGADSAEHLTQWAATHLQDQPLNIGVV
HHCCEEEEEEEECCCCHHHHHHEEEEECCCCEECCCCHHHHHHHHHHHHCCCCCCEEEEE
DSAEYERYYPNYQGFLNGMAASDVTWKEVSSVDAITQADIAHIKEMLSENPQINILWGGS
CCCHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
NLATELSVAAVEDLGLQAKVKVFGILDLSKDKARMLLDPNSPLQSIIDQAGVKIGYKAVH
CCHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCEEEECCCCHHHHHHHHHCCCHHHHHHH
TAVEVLRHKKTQYTEYPIDHRLLTQTDKAAVKELLTEANSIQ
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA