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The map label for this gene is yciR [C]

Identifier: 158337940

GI number: 158337940

Start: 4863641

End: 4864180

Strand: Direct

Name: yciR [C]

Synonym: AM1_4827

Alternate gene names: 158337940

Gene position: 4863641-4864180 (Clockwise)

Preceding gene: 158337936

Following gene: 158337941

Centisome position: 74.78

GC content: 44.07

Gene sequence:

>540_bases
ATGTCGTCGAATGAAAAAACTAAAGTAGGGAACGCAACAGATGCCCTAACTGGACTAATGCTACCTGACTTGATTCCCGA
CCATCTCATTCAGCAACCGCAATGCGGCATCACCATCTTGGACATCGACACATTTCGAGTTTTTACTGCATGTTATGGCT
ATCAGGAAAGCGATGCAGTCCTCAGAGACTTAGCTCAGACCCTGCAAAGAATGGCTCCTGAACAATGTCATATTTTTCGA
TCCGCAGGGGATGAGTTCACCATTCTGATGGAATACTTACCCATCAATCAGTTGCTAGATTTTGCATTTAAACTGAGTAA
GGCGATTAAGGCACAGTTTGCTCATTACCCAGCGGGAAAGTATTTTTATTTGATCAAAGATAAGCCAAGTTCTCGGATTC
AGAGTATTCCATTGACCGTTTCTTGCGGCGTCGCTCTTTATCCAGATCATGGAAACAGCTACGCATGGATAAAAGAAGCG
ATATATCAGGCCTGGTACATTCAAGGGAAGCGAGAAGTAGTGACTTCCCTGCCACTTTAG

Upstream 100 bases:

>100_bases
CAAGCTCTGAAAATTAGCAGCTATATCATAATTAATTCGTTACCGGAACCCCAAGAGTTTGAGTGTAGGATCGAAAACCC
AAAGACATAGGAATTTCTGG

Downstream 100 bases:

>100_bases
ATTCTGTTCAAGACTTTGCTAAGCAATTATTTGTGGATGATCAGTCAATGAGTGTTGGTAAAAGTCAGTAATATCAAGGC
TTAGCTGCATGGCAGTAAGT

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSSNEKTKVGNATDALTGLMLPDLIPDHLIQQPQCGITILDIDTFRVFTACYGYQESDAVLRDLAQTLQRMAPEQCHIFR
SAGDEFTILMEYLPINQLLDFAFKLSKAIKAQFAHYPAGKYFYLIKDKPSSRIQSIPLTVSCGVALYPDHGNSYAWIKEA
IYQAWYIQGKREVVTSLPL

Sequences:

>Translated_179_residues
MSSNEKTKVGNATDALTGLMLPDLIPDHLIQQPQCGITILDIDTFRVFTACYGYQESDAVLRDLAQTLQRMAPEQCHIFR
SAGDEFTILMEYLPINQLLDFAFKLSKAIKAQFAHYPAGKYFYLIKDKPSSRIQSIPLTVSCGVALYPDHGNSYAWIKEA
IYQAWYIQGKREVVTSLPL
>Mature_178_residues
SSNEKTKVGNATDALTGLMLPDLIPDHLIQQPQCGITILDIDTFRVFTACYGYQESDAVLRDLAQTLQRMAPEQCHIFRS
AGDEFTILMEYLPINQLLDFAFKLSKAIKAQFAHYPAGKYFYLIKDKPSSRIQSIPLTVSCGVALYPDHGNSYAWIKEAI
YQAWYIQGKREVVTSLPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20200; Mature: 20069

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNEKTKVGNATDALTGLMLPDLIPDHLIQQPQCGITILDIDTFRVFTACYGYQESDAV
CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCEEEEECHHHHHHHHHHCCCCHHHH
LRDLAQTLQRMAPEQCHIFRSAGDEFTILMEYLPINQLLDFAFKLSKAIKAQFAHYPAGK
HHHHHHHHHHHCHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
YFYLIKDKPSSRIQSIPLTVSCGVALYPDHGNSYAWIKEAIYQAWYIQGKREVVTSLPL
EEEEEECCCCHHHHCCCEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCC
>Mature Secondary Structure 
SSNEKTKVGNATDALTGLMLPDLIPDHLIQQPQCGITILDIDTFRVFTACYGYQESDAV
CCCCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCEEEEECHHHHHHHHHHCCCCHHHH
LRDLAQTLQRMAPEQCHIFRSAGDEFTILMEYLPINQLLDFAFKLSKAIKAQFAHYPAGK
HHHHHHHHHHHCHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
YFYLIKDKPSSRIQSIPLTVSCGVALYPDHGNSYAWIKEAIYQAWYIQGKREVVTSLPL
EEEEEECCCCHHHHCCCEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA