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The map label for this gene is ycjD [H]

Identifier: 158337848

GI number: 158337848

Start: 4770902

End: 4771327

Strand: Reverse

Name: ycjD [H]

Synonym: AM1_4734

Alternate gene names: 158337848

Gene position: 4771327-4770902 (Counterclockwise)

Preceding gene: 158337849

Following gene: 158337847

Centisome position: 73.36

GC content: 51.41

Gene sequence:

>426_bases
ATGCGAGAGAAACAGACACAACACCACCGCATTCGCGGCACAACCCCAGCCGTCGTTGCCGCCGCGCGACAACTAAGACT
CAATCTAACGCCAGCAGAACAAAAGCTGTGGAAAGCACTGCAAAAACGTCAACTCAGCGGCCTGAAATTCCGGTGTCAAC
ACGCCATTGGTTCGTTCATTGTCGATTTTTACTGTCCCCAATGCCGATTAGTGATTGAGCTAGACGGCGACATCCACAAT
CAGCAGGTGGAATATGATGAAGCCCGTACCGAACAGCTCAACCAGCTGGGTTACCGAGTGATCCGATTCCATAACTCAGA
CGTTATGCACCACCTCGATCATGTACTTCAGCAAATCCGACAGGCGAGCGAGCAAAGCATTGATAGACACTCAAAGTCCC
CCAGAATGGGGGATTTAGGGGGCTAA

Upstream 100 bases:

>100_bases
AGCTCCGTTAAACCCTGCATCCGCCCCCTAAATCCCCCATTCTGGGGGACTTTGAGATTTATGATTATCCTAGATGGGAA
ACAGGGTTGGGGGTAACACG

Downstream 100 bases:

>100_bases
TGCAGCATAATTAGAACTATTGACTAGAAAAATATTGGATCTAGTCGTGAGGGTTCGTGATTTCCTTCACAACATACCCC
TAGCTAGCTCACAAAAGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MREKQTQHHRIRGTTPAVVAAARQLRLNLTPAEQKLWKALQKRQLSGLKFRCQHAIGSFIVDFYCPQCRLVIELDGDIHN
QQVEYDEARTEQLNQLGYRVIRFHNSDVMHHLDHVLQQIRQASEQSIDRHSKSPRMGDLGG

Sequences:

>Translated_141_residues
MREKQTQHHRIRGTTPAVVAAARQLRLNLTPAEQKLWKALQKRQLSGLKFRCQHAIGSFIVDFYCPQCRLVIELDGDIHN
QQVEYDEARTEQLNQLGYRVIRFHNSDVMHHLDHVLQQIRQASEQSIDRHSKSPRMGDLGG
>Mature_141_residues
MREKQTQHHRIRGTTPAVVAAARQLRLNLTPAEQKLWKALQKRQLSGLKFRCQHAIGSFIVDFYCPQCRLVIELDGDIHN
QQVEYDEARTEQLNQLGYRVIRFHNSDVMHHLDHVLQQIRQASEQSIDRHSKSPRMGDLGG

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=117, Percent_Identity=43.5897435897436, Blast_Score=99, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 16389; Mature: 16389

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREKQTQHHRIRGTTPAVVAAARQLRLNLTPAEQKLWKALQKRQLSGLKFRCQHAIGSFI
CCCCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VDFYCPQCRLVIELDGDIHNQQVEYDEARTEQLNQLGYRVIRFHNSDVMHHLDHVLQQIR
HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
QASEQSIDRHSKSPRMGDLGG
HHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MREKQTQHHRIRGTTPAVVAAARQLRLNLTPAEQKLWKALQKRQLSGLKFRCQHAIGSFI
CCCCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VDFYCPQCRLVIELDGDIHNQQVEYDEARTEQLNQLGYRVIRFHNSDVMHHLDHVLQQIR
HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
QASEQSIDRHSKSPRMGDLGG
HHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]