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The map label for this gene is rpoE [H]

Identifier: 158337771

GI number: 158337771

Start: 4691696

End: 4692259

Strand: Direct

Name: rpoE [H]

Synonym: AM1_4655

Alternate gene names: 158337771

Gene position: 4691696-4692259 (Clockwise)

Preceding gene: 158337769

Following gene: 158337772

Centisome position: 72.14

GC content: 50.35

Gene sequence:

>564_bases
GTGAGTACCGAACAACTGTCAACCGACGATTCAGACCATGCCTTAATTCAAGGCTGTTTGCGGGGCAGTACCCAAAGTTT
TCGGGTTCTGTATCGTCGCCATCAGGCCCGAGTGCGGTCCACCCTCATGTCTTTATGCGATCCAGAGGTGTTAGATGACC
TCGTTCAGGATGTGTTTTTTCGAGTTTGGAAAGGATTACCCAAAATGGAAGGTCGGGCCAAATTTACGACTTGGCTCTAT
CGCATTACTTGGAATGTGGCCGCAGATTATCGACGGTCAGCAGCCCAGAAGCGGACGCGTTGGCAAGCCCTGATCCATCA
ACTCCCCAGCCAGTCCACAGAGCCCAATTGGCAGCATCTTCACCATCAGGATTTGATTAAACGTGGCATGGGTCAACTGA
GTTTTGAACATCGCAGTGTGATTGTGCTCCATGACTTACAAGATCTTCCCCAGCAAGAGATTGCCGAGATGTTTGAGATT
CCCGTAGGCACCGTCAAGTCTCGTCTATACCACGCCAGAGCGGCCCTCCGAAAATTTTTGCAACATGAAGGGATTTCCCT
ATGA

Upstream 100 bases:

>100_bases
CTGCAGCGCTTTTTCGATGTCATTGAACCAATCCTTGCTGAATTCAGTCTAAAGGATAGAGAAGAGCTGCCGGTAATAAA
TTATTGAAAACAAGTTAAAG

Downstream 100 bases:

>100_bases
ACCACCCTCCCGATCCTGATCTGAACGGATCTGATGCCCATCAAGATTCATTCCCAGATGACGCTCCGTTGGTGAATTTT
CTCCAGCGGTATCAACCAGA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSTEQLSTDDSDHALIQGCLRGSTQSFRVLYRRHQARVRSTLMSLCDPEVLDDLVQDVFFRVWKGLPKMEGRAKFTTWLY
RITWNVAADYRRSAAQKRTRWQALIHQLPSQSTEPNWQHLHHQDLIKRGMGQLSFEHRSVIVLHDLQDLPQQEIAEMFEI
PVGTVKSRLYHARAALRKFLQHEGISL

Sequences:

>Translated_187_residues
MSTEQLSTDDSDHALIQGCLRGSTQSFRVLYRRHQARVRSTLMSLCDPEVLDDLVQDVFFRVWKGLPKMEGRAKFTTWLY
RITWNVAADYRRSAAQKRTRWQALIHQLPSQSTEPNWQHLHHQDLIKRGMGQLSFEHRSVIVLHDLQDLPQQEIAEMFEI
PVGTVKSRLYHARAALRKFLQHEGISL
>Mature_186_residues
STEQLSTDDSDHALIQGCLRGSTQSFRVLYRRHQARVRSTLMSLCDPEVLDDLVQDVFFRVWKGLPKMEGRAKFTTWLYR
ITWNVAADYRRSAAQKRTRWQALIHQLPSQSTEPNWQHLHHQDLIKRGMGQLSFEHRSVIVLHDLQDLPQQEIAEMFEIP
VGTVKSRLYHARAALRKFLQHEGISL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=191, Percent_Identity=28.7958115183246, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21888; Mature: 21757

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEQLSTDDSDHALIQGCLRGSTQSFRVLYRRHQARVRSTLMSLCDPEVLDDLVQDVFF
CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RVWKGLPKMEGRAKFTTWLYRITWNVAADYRRSAAQKRTRWQALIHQLPSQSTEPNWQHL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
HHQDLIKRGMGQLSFEHRSVIVLHDLQDLPQQEIAEMFEIPVGTVKSRLYHARAALRKFL
HHHHHHHHHHHHCCCCCCCEEEECCHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
QHEGISL
HHCCCCC
>Mature Secondary Structure 
STEQLSTDDSDHALIQGCLRGSTQSFRVLYRRHQARVRSTLMSLCDPEVLDDLVQDVFF
CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RVWKGLPKMEGRAKFTTWLYRITWNVAADYRRSAAQKRTRWQALIHQLPSQSTEPNWQHL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
HHQDLIKRGMGQLSFEHRSVIVLHDLQDLPQQEIAEMFEIPVGTVKSRLYHARAALRKFL
HHHHHHHHHHHHCCCCCCCEEEECCHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
QHEGISL
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]