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The map label for this gene is rbcR [H]

Identifier: 158337733

GI number: 158337733

Start: 4649962

End: 4650951

Strand: Reverse

Name: rbcR [H]

Synonym: AM1_4617

Alternate gene names: 158337733

Gene position: 4650951-4649962 (Counterclockwise)

Preceding gene: 158337734

Following gene: 158337732

Centisome position: 71.51

GC content: 47.98

Gene sequence:

>990_bases
ATGTCTGACCTTCCGTTTACGCTGGATCAACTCCGCATTCTCAAAGCGATTGCTGCGGAGGGGAGTTTTAAGCGTGCCGC
TGATAGCCTATATGTTTCTCAACCTGCCGTTAGCCTTCAAGTCCAAAACTTAGAGCGCCAGCTAGCTGTCCCTCTTTTTG
ATCGAGGGGGACGACGAGCCCAGTTGACTGAAGCAGGTCATCTCTTGTTGGACTATGGCGATAAAATTTTAGCGCTCTGC
CAGGAAACCTGCCGGGCCATCGAAGATTTGCAGAACCTGCAGGGGGGCACCCTCGTGATTGGAGCGAGTCAGACGACGGG
AACCTACCTAATGCCCCGTCTTATCGGATTATTCCGCCAAGCTTATCCAGATGTAGCCGTTCAGCTCCATGTTCATTCCA
CTCGCCGCACTTGCTGGAGTATTGTCAACGGGCAAGTCGATTTAGCGATTATTGGCGGCGAAGTTCCGTTGGAGCTGCAA
GAATCTTTGACGATGACGGCCTATGCTGAAGATGAGCTGGCCTTGATTTTGCCAGAGTCCCATCCTCTTGCTGAGTCTGC
AGTGATTCAACGAGAAGATCTGTACAAGCTTAGCTTTATCACCCTAGATGCCCAGTCCACGATTCGTAAGGTGATTGATC
AAATTCTGACCCGGGGCAATATTGATCCTCGTTTGTTAAAAATTGAAATGGAACTGAATTCCATTGAAGCCATTAAGAAT
GCCGTCCAGTCAGGGCTAGGCGCTGCTTTTGTCTCTACCTCTGCCATTGAAAAAGAACTGGAGCTGGGTAGTCTAAAGCG
GGTAAAAATTGAGAACGTTGCTATAAAGAGGATATTATCTCTGATTATCAATCCCAATCGATATCGGTCCAAAGCGGCGG
AGATTTTTATCTCAGAGATTTTGCCCAAGTTTAGTACCTTATCCTCAGATCTAAAAAGGATTGCCAACTCATCTGACGAT
GCTGAACTCGTTACCTCTGCCACTAACTAG

Upstream 100 bases:

>100_bases
CAAGAATCAACAAACAGTGCGACCCGCTACGTTTTGCGGTTAACTTAGAATATCTTGATTACTGGACGATTTTTATTGTC
TTACATGCAGGTCATCCCCC

Downstream 100 bases:

>100_bases
TTTTTGCGAGTAGCTGCAACTCTTCAATGGAGATTTACTGTACCCGCCCAAATTGTCAGCGTCCGAATAACTATTTCGCT
GACCTGGATGATCCCCAAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MSDLPFTLDQLRILKAIAAEGSFKRAADSLYVSQPAVSLQVQNLERQLAVPLFDRGGRRAQLTEAGHLLLDYGDKILALC
QETCRAIEDLQNLQGGTLVIGASQTTGTYLMPRLIGLFRQAYPDVAVQLHVHSTRRTCWSIVNGQVDLAIIGGEVPLELQ
ESLTMTAYAEDELALILPESHPLAESAVIQREDLYKLSFITLDAQSTIRKVIDQILTRGNIDPRLLKIEMELNSIEAIKN
AVQSGLGAAFVSTSAIEKELELGSLKRVKIENVAIKRILSLIINPNRYRSKAAEIFISEILPKFSTLSSDLKRIANSSDD
AELVTSATN

Sequences:

>Translated_329_residues
MSDLPFTLDQLRILKAIAAEGSFKRAADSLYVSQPAVSLQVQNLERQLAVPLFDRGGRRAQLTEAGHLLLDYGDKILALC
QETCRAIEDLQNLQGGTLVIGASQTTGTYLMPRLIGLFRQAYPDVAVQLHVHSTRRTCWSIVNGQVDLAIIGGEVPLELQ
ESLTMTAYAEDELALILPESHPLAESAVIQREDLYKLSFITLDAQSTIRKVIDQILTRGNIDPRLLKIEMELNSIEAIKN
AVQSGLGAAFVSTSAIEKELELGSLKRVKIENVAIKRILSLIINPNRYRSKAAEIFISEILPKFSTLSSDLKRIANSSDD
AELVTSATN
>Mature_328_residues
SDLPFTLDQLRILKAIAAEGSFKRAADSLYVSQPAVSLQVQNLERQLAVPLFDRGGRRAQLTEAGHLLLDYGDKILALCQ
ETCRAIEDLQNLQGGTLVIGASQTTGTYLMPRLIGLFRQAYPDVAVQLHVHSTRRTCWSIVNGQVDLAIIGGEVPLELQE
SLTMTAYAEDELALILPESHPLAESAVIQREDLYKLSFITLDAQSTIRKVIDQILTRGNIDPRLLKIEMELNSIEAIKNA
VQSGLGAAFVSTSAIEKELELGSLKRVKIENVAIKRILSLIINPNRYRSKAAEIFISEILPKFSTLSSDLKRIANSSDDA
ELVTSATN

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=298, Percent_Identity=32.8859060402685, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI157672245, Length=299, Percent_Identity=28.7625418060201, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787530, Length=259, Percent_Identity=27.4131274131274, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=25.8503401360544, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=28.4246575342466, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=25.4295532646048, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI87082132, Length=255, Percent_Identity=28.2352941176471, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=28.719723183391, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788296, Length=249, Percent_Identity=26.9076305220884, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788887, Length=247, Percent_Identity=26.7206477732794, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788626, Length=241, Percent_Identity=30.2904564315353, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789204, Length=329, Percent_Identity=25.2279635258359, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790208, Length=255, Percent_Identity=27.4509803921569, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081904, Length=181, Percent_Identity=28.7292817679558, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788297, Length=236, Percent_Identity=25.4237288135593, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787806, Length=251, Percent_Identity=24.3027888446215, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082024, Length=178, Percent_Identity=29.7752808988764, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI2367136, Length=247, Percent_Identity=24.2914979757085, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=179, Percent_Identity=29.608938547486, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786401, Length=151, Percent_Identity=34.4370860927152, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787949, Length=272, Percent_Identity=25.3676470588235, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790262, Length=241, Percent_Identity=24.4813278008299, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36181; Mature: 36050

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLPFTLDQLRILKAIAAEGSFKRAADSLYVSQPAVSLQVQNLERQLAVPLFDRGGRRA
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCEEEHHHHHHHHCCCHHCCCCCEE
QLTEAGHLLLDYGDKILALCQETCRAIEDLQNLQGGTLVIGASQTTGTYLMPRLIGLFRQ
EHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
AYPDVAVQLHVHSTRRTCWSIVNGQVDLAIIGGEVPLELQESLTMTAYAEDELALILPES
HCCCEEEEEEECHHHHHHHHHHCCCEEEEEECCCCCHHHHHCEEEEEECCCCEEEEECCC
HPLAESAVIQREDLYKLSFITLDAQSTIRKVIDQILTRGNIDPRLLKIEMELNSIEAIKN
CCCHHHHHHHHHCCEEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHH
AVQSGLGAAFVSTSAIEKELELGSLKRVKIENVAIKRILSLIINPNRYRSKAAEIFISEI
HHHHCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LPKFSTLSSDLKRIANSSDDAELVTSATN
HHHHHHHHHHHHHHHCCCCCCHHHCCCCC
>Mature Secondary Structure 
SDLPFTLDQLRILKAIAAEGSFKRAADSLYVSQPAVSLQVQNLERQLAVPLFDRGGRRA
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCEEEHHHHHHHHCCCHHCCCCCEE
QLTEAGHLLLDYGDKILALCQETCRAIEDLQNLQGGTLVIGASQTTGTYLMPRLIGLFRQ
EHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
AYPDVAVQLHVHSTRRTCWSIVNGQVDLAIIGGEVPLELQESLTMTAYAEDELALILPES
HCCCEEEEEEECHHHHHHHHHHCCCEEEEEECCCCCHHHHHCEEEEEECCCCEEEEECCC
HPLAESAVIQREDLYKLSFITLDAQSTIRKVIDQILTRGNIDPRLLKIEMELNSIEAIKN
CCCHHHHHHHHHCCEEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHH
AVQSGLGAAFVSTSAIEKELELGSLKRVKIENVAIKRILSLIINPNRYRSKAAEIFISEI
HHHHCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LPKFSTLSSDLKRIANSSDDAELVTSATN
HHHHHHHHHHHHHHHCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]