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The map label for this gene is yohK [H]

Identifier: 158337579

GI number: 158337579

Start: 4488713

End: 4489444

Strand: Reverse

Name: yohK [H]

Synonym: AM1_4460

Alternate gene names: 158337579

Gene position: 4489444-4488713 (Counterclockwise)

Preceding gene: 158337580

Following gene: 158337575

Centisome position: 69.03

GC content: 52.05

Gene sequence:

>732_bases
ATGCCTAAATCAAACTTGACAGAAATCTGGGTGTACTTAGCTGCTTCACCTTTGTTGGGCTTGAGCATTACCCTAGCGGC
TTATCAAATGGCCTATAGAATATACCGATGGGGGAAAGGGCATCCGCTGTTGAACCCGGTGGCTATTGCAGTGGCGTTGC
TAATTGGGTTGTTATCCCTCACTAAGACGTCATACTTCACTTATTTTGAAGGGGCGCAATTTGTGCACTTTTTGCTGGGA
CCAGCGACGGTCTCCCTGGCCATTCCTCTCTATAAGCAATTGGCTAAATTACGACGACTATGGCTACCGGTTACCTTGGC
CTTAATGGTAGGCATCAGTGCCGCAGCGCTGAGTGCGATCGCAACTGCTGCACTCCTAGGTGCAACGCCCCAAACCCTCC
TGTCCCTAGCGCCCAAATCCGTTACGGCACCTGTAGCCATGGGGATTACTGAGAAAATCGGTGGCCTCCCCTCCTTAACG
GCGGTTTTAGTAGTGATGACGGGCATTATTGGCGCTACCTTGGGGACCCCTATCTTCCGTTGGCTGGGCATCCGAGACGA
TAGCGTCCGAGGAATTGCTATGGGGATTACATCCCATGGCATCGGCACGGCACGGGCCTTTCAGGTGAGTGGGGAAATGG
GAGCCTTTTCAGGGCTAGGGATGGCTTTATCAGCCTTTGTCTCTGCTGCTCTGTTACCCTGGCTGTTACGAATGTTAAAT
CTGGACGCTTAA

Upstream 100 bases:

>100_bases
ATTCTGGTGGCCTTATTGGTGAGTACGGTGGTGACGTTAATGGTGTCGGCCTGGACCATGCAGGTGGCGAGTAAGGTATT
GACCCTGAGGAGACGCTCCG

Downstream 100 bases:

>100_bases
ACGGGTGTCGGGTGAGTTTATCTTTGATCATCCCCTAGATGTGACGCTAACTTCACCTTGAAGCGATTGTTTTCGGCAAT
TATCAATATTACTCATAAAC

Product: LrgB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MPKSNLTEIWVYLAASPLLGLSITLAAYQMAYRIYRWGKGHPLLNPVAIAVALLIGLLSLTKTSYFTYFEGAQFVHFLLG
PATVSLAIPLYKQLAKLRRLWLPVTLALMVGISAAALSAIATAALLGATPQTLLSLAPKSVTAPVAMGITEKIGGLPSLT
AVLVVMTGIIGATLGTPIFRWLGIRDDSVRGIAMGITSHGIGTARAFQVSGEMGAFSGLGMALSAFVSAALLPWLLRMLN
LDA

Sequences:

>Translated_243_residues
MPKSNLTEIWVYLAASPLLGLSITLAAYQMAYRIYRWGKGHPLLNPVAIAVALLIGLLSLTKTSYFTYFEGAQFVHFLLG
PATVSLAIPLYKQLAKLRRLWLPVTLALMVGISAAALSAIATAALLGATPQTLLSLAPKSVTAPVAMGITEKIGGLPSLT
AVLVVMTGIIGATLGTPIFRWLGIRDDSVRGIAMGITSHGIGTARAFQVSGEMGAFSGLGMALSAFVSAALLPWLLRMLN
LDA
>Mature_242_residues
PKSNLTEIWVYLAASPLLGLSITLAAYQMAYRIYRWGKGHPLLNPVAIAVALLIGLLSLTKTSYFTYFEGAQFVHFLLGP
ATVSLAIPLYKQLAKLRRLWLPVTLALMVGISAAALSAIATAALLGATPQTLLSLAPKSVTAPVAMGITEKIGGLPSLTA
VLVVMTGIIGATLGTPIFRWLGIRDDSVRGIAMGITSHGIGTARAFQVSGEMGAFSGLGMALSAFVSAALLPWLLRMLNL
DA

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=218, Percent_Identity=38.9908256880734, Blast_Score=156, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 25535; Mature: 25404

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSNLTEIWVYLAASPLLGLSITLAAYQMAYRIYRWGKGHPLLNPVAIAVALLIGLLSL
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
TKTSYFTYFEGAQFVHFLLGPATVSLAIPLYKQLAKLRRLWLPVTLALMVGISAAALSAI
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATAALLGATPQTLLSLAPKSVTAPVAMGITEKIGGLPSLTAVLVVMTGIIGATLGTPIFR
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
WLGIRDDSVRGIAMGITSHGIGTARAFQVSGEMGAFSGLGMALSAFVSAALLPWLLRMLN
HHCCCCCCCCEEEEEHHHCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
LDA
CCC
>Mature Secondary Structure 
PKSNLTEIWVYLAASPLLGLSITLAAYQMAYRIYRWGKGHPLLNPVAIAVALLIGLLSL
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
TKTSYFTYFEGAQFVHFLLGPATVSLAIPLYKQLAKLRRLWLPVTLALMVGISAAALSAI
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATAALLGATPQTLLSLAPKSVTAPVAMGITEKIGGLPSLTAVLVVMTGIIGATLGTPIFR
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
WLGIRDDSVRGIAMGITSHGIGTARAFQVSGEMGAFSGLGMALSAFVSAALLPWLLRMLN
HHCCCCCCCCEEEEEHHHCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
LDA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]