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The map label for this gene is ctpA [H]

Identifier: 158337578

GI number: 158337578

Start: 4487136

End: 4488413

Strand: Direct

Name: ctpA [H]

Synonym: AM1_4459

Alternate gene names: 158337578

Gene position: 4487136-4488413 (Clockwise)

Preceding gene: 158337577

Following gene: 158337583

Centisome position: 68.99

GC content: 49.77

Gene sequence:

>1278_bases
ATGTACAACGGTGCTATTGATTCCCCCAGTGAAAGGTCCTCCATGTCTAAGGTTCATGTGCAAGTGTTGCGGATGGTGGG
AGTTGCGATCGCAACTCCAATCCTGACCTTATCCACCGCCGAAGCCAAGCTAGAAAACAGTCACAAGGCGCTGGTTGATC
AAGCCTGGCAAATCGTTCAGGAAGAATATGTCGACCGCACCTTCAATCAGCAGGATTGGCAAGAAGTCCGCCAAGACTAT
TTAAGTCGTTCCTATACCTCCAAGCAGGACGCCTACGTCGCTGTCAGCAAAATGGTCAGGAAGCTGCAAGATCCTTACAC
CCGCTTTCTCACCCCCGATGGCATCAAGGATCTCGTCGATAATGTGTCAGGTGGATTTATTGGTGTGGGTGTCACCGTCT
CCCTTGATCCCTTAACCCGAGAGTGGCAGGTGATCGAAACTGTAGCGGACTCTCCTGCTGATGCGGCTGGCATTCAACCT
CAAGATATTGTCGTCAGCATCAACGGCACCCCGACCTCAGAGATTAACCCCCGTCAGGCCAGCGAATATATCATTGGTGC
CGTGGGGAGTAAGGTCACCGTCCAGATTCGCCGAGGCAAAGAATTTTCCCGCTATAAGCTGGTGCGGGAGAAGATTGATG
TCAATCCCTTGGTCTATGAAGTGCAGGAAACGTCGAAAGGGAAAGTCGGCTATATTCGGATGCCGGTTTTCACCACCAAA
TCGGCAAAAGCGATGAAAACAGCCCTGACGGATTTAGAGAAGCAACAGGTCAAAGGGTATGTCCTTGATCTACGCCAAAA
CCCTGGCGGCGTCTTTGATGCCAGTATTGACATTGCCCGCATGTGGATGGGAAAAGACCGCTTAATTTCTAGTGTGGATG
AAAAAGGTAAAAAACAAGACTTTTTTGCCTATGGCCCCGTCTTGACCAACAAACCCCTGGTGATTTTGATCGATGAAAAA
TCCGCCAGCGCCAGTGAAGTGTTAGCTGCTGCGCTCCAAGATCACAAACGGGCTCAGCTCGTCGGCACCCCTACGTTTGG
TAAAGGGGTGGTTCAAGTCCTCAAAAGTCTTGAAGATGGCTCTGGATTGGTGGTCACCGTCGCGAAGTACTATACGCCCA
AGGGTAAGAATATTAACCAGATTGGTATCAAGCCTAATATTTTTGTCAAAAGTGAGGAAGGCAAACCTTTTAAGCCGCAA
CCTGGCCAGGTTTTACCACCGGAATCCGATCCTCAATATACTCGGGGGCTCAAGGTCCTAACGAAAAAGTTGAAATAG

Upstream 100 bases:

>100_bases
AGTGGATGCCAGAGGTGGCTGCTTGGTATGAGAAGACCCGCTGGCGCAAGGGACCTTTAGCCCCCTAATGATCGTCAACT
GGATCTTGTTGCATGGTCCC

Downstream 100 bases:

>100_bases
CTATAAAAAAAGCTAGCGATTTGCTAGCTTCTACAGAATCAGTCACGTTGTATCTCATTTCGAGGAAGCCAAACTGCGCG
TTCCCAGTTGTGCAGCAGGT

Product: carboxyl--terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MYNGAIDSPSERSSMSKVHVQVLRMVGVAIATPILTLSTAEAKLENSHKALVDQAWQIVQEEYVDRTFNQQDWQEVRQDY
LSRSYTSKQDAYVAVSKMVRKLQDPYTRFLTPDGIKDLVDNVSGGFIGVGVTVSLDPLTREWQVIETVADSPADAAGIQP
QDIVVSINGTPTSEINPRQASEYIIGAVGSKVTVQIRRGKEFSRYKLVREKIDVNPLVYEVQETSKGKVGYIRMPVFTTK
SAKAMKTALTDLEKQQVKGYVLDLRQNPGGVFDASIDIARMWMGKDRLISSVDEKGKKQDFFAYGPVLTNKPLVILIDEK
SASASEVLAAALQDHKRAQLVGTPTFGKGVVQVLKSLEDGSGLVVTVAKYYTPKGKNINQIGIKPNIFVKSEEGKPFKPQ
PGQVLPPESDPQYTRGLKVLTKKLK

Sequences:

>Translated_425_residues
MYNGAIDSPSERSSMSKVHVQVLRMVGVAIATPILTLSTAEAKLENSHKALVDQAWQIVQEEYVDRTFNQQDWQEVRQDY
LSRSYTSKQDAYVAVSKMVRKLQDPYTRFLTPDGIKDLVDNVSGGFIGVGVTVSLDPLTREWQVIETVADSPADAAGIQP
QDIVVSINGTPTSEINPRQASEYIIGAVGSKVTVQIRRGKEFSRYKLVREKIDVNPLVYEVQETSKGKVGYIRMPVFTTK
SAKAMKTALTDLEKQQVKGYVLDLRQNPGGVFDASIDIARMWMGKDRLISSVDEKGKKQDFFAYGPVLTNKPLVILIDEK
SASASEVLAAALQDHKRAQLVGTPTFGKGVVQVLKSLEDGSGLVVTVAKYYTPKGKNINQIGIKPNIFVKSEEGKPFKPQ
PGQVLPPESDPQYTRGLKVLTKKLK
>Mature_425_residues
MYNGAIDSPSERSSMSKVHVQVLRMVGVAIATPILTLSTAEAKLENSHKALVDQAWQIVQEEYVDRTFNQQDWQEVRQDY
LSRSYTSKQDAYVAVSKMVRKLQDPYTRFLTPDGIKDLVDNVSGGFIGVGVTVSLDPLTREWQVIETVADSPADAAGIQP
QDIVVSINGTPTSEINPRQASEYIIGAVGSKVTVQIRRGKEFSRYKLVREKIDVNPLVYEVQETSKGKVGYIRMPVFTTK
SAKAMKTALTDLEKQQVKGYVLDLRQNPGGVFDASIDIARMWMGKDRLISSVDEKGKKQDFFAYGPVLTNKPLVILIDEK
SASASEVLAAALQDHKRAQLVGTPTFGKGVVQVLKSLEDGSGLVVTVAKYYTPKGKNINQIGIKPNIFVKSEEGKPFKPQ
PGQVLPPESDPQYTRGLKVLTKKLK

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=366, Percent_Identity=29.7814207650273, Blast_Score=124, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 46949; Mature: 46949

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNGAIDSPSERSSMSKVHVQVLRMVGVAIATPILTLSTAEAKLENSHKALVDQAWQIVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHH
EEYVDRTFNQQDWQEVRQDYLSRSYTSKQDAYVAVSKMVRKLQDPYTRFLTPDGIKDLVD
HHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHH
NVSGGFIGVGVTVSLDPLTREWQVIETVADSPADAAGIQPQDIVVSINGTPTSEINPRQA
CCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHH
SEYIIGAVGSKVTVQIRRGKEFSRYKLVREKIDVNPLVYEVQETSKGKVGYIRMPVFTTK
HHHHEEECCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECEEECC
SAKAMKTALTDLEKQQVKGYVLDLRQNPGGVFDASIDIARMWMGKDRLISSVDEKGKKQD
CHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCHHHHHHHCCHHHHHHHHHHCCCCCC
FFAYGPVLTNKPLVILIDEKSASASEVLAAALQDHKRAQLVGTPTFGKGVVQVLKSLEDG
EEEECCEECCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCC
SGLVVTVAKYYTPKGKNINQIGIKPNIFVKSEEGKPFKPQPGQVLPPESDPQYTRGLKVL
CCEEEEEEHHCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
TKKLK
HHHCC
>Mature Secondary Structure
MYNGAIDSPSERSSMSKVHVQVLRMVGVAIATPILTLSTAEAKLENSHKALVDQAWQIVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHH
EEYVDRTFNQQDWQEVRQDYLSRSYTSKQDAYVAVSKMVRKLQDPYTRFLTPDGIKDLVD
HHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHH
NVSGGFIGVGVTVSLDPLTREWQVIETVADSPADAAGIQPQDIVVSINGTPTSEINPRQA
CCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHH
SEYIIGAVGSKVTVQIRRGKEFSRYKLVREKIDVNPLVYEVQETSKGKVGYIRMPVFTTK
HHHHEEECCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECEEECC
SAKAMKTALTDLEKQQVKGYVLDLRQNPGGVFDASIDIARMWMGKDRLISSVDEKGKKQD
CHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCHHHHHHHCCHHHHHHHHHHCCCCCC
FFAYGPVLTNKPLVILIDEKSASASEVLAAALQDHKRAQLVGTPTFGKGVVQVLKSLEDG
EEEECCEECCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCC
SGLVVTVAKYYTPKGKNINQIGIKPNIFVKSEEGKPFKPQPGQVLPPESDPQYTRGLKVL
CCEEEEEEHHCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
TKKLK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]