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The map label for this gene is araQ [H]

Identifier: 158337536

GI number: 158337536

Start: 4442243

End: 4443139

Strand: Reverse

Name: araQ [H]

Synonym: AM1_4417

Alternate gene names: 158337536

Gene position: 4443139-4442243 (Counterclockwise)

Preceding gene: 158337537

Following gene: 158337535

Centisome position: 68.32

GC content: 44.59

Gene sequence:

>897_bases
ATGGTGCTCAAGCAAAATCGATATTGGAAATGGTTGTCACAAGGAGTAACCTATGCACTCCTTGGGGTCATTGCCTTGGC
TATGTTATTGCCTTTATTATGGCTGGTTAGTACAGCCTTCAAAGGCCAGGAAGACAATATTTTCCCCGTCGCGGCGTCGA
AAGACTTGTCTTTATCTCCCCTGGAGAATATTGTTTTCTTCTTAAAGCAGTTATTTCCTATCCATCCCACTGGGCACAAT
TTTGTCTCTGTTTGGCAACAACAGCCTTTTGGGCAGTATTTTCTCAACAGTCTATTCGTTTCATCTCTCACTGTAACCCT
CAACGTTTTGTTCAGTTCTCTAGCTGCTTATCCTCTGGCTAGACTGAACTTTAAGGGTAAGGATTTTATTTTTGCGGTCG
TTGTCTCCACAATTATGATTCCTTTCCAAATTGTGATGATCCCGCTTTACGTCTTAGTGGTTGAGTTAGGGCTCAAAAAT
ACCTATCTGGGCGTGATTTTTCCTGCGATCGCATCTGCGTTTGGTATCTTTCTACTCCGACAGGCTTTCCAAGGGGTTCC
CAAAGAACTAGAAGAAGCTGCACGCATCGACGGCTGTACAGATCTAGGGATTTGGTGGCATATTATGTTGCCATCGGTTA
GACCCGCCCTAGTTACCCTGGCAATATTCGTTTTCATTGGCTCTTGGGGAGAATTTTTATGGCCCCTCATCATTCTGGAT
CAGCCCGAGTATTACACCCTCCCCCTCGCAGTGTCCAATCTGTTTAGTGCCTTTGGACTCAATTGGCGTTTAATTGCCGC
AGGTTCAGTGATTTCCATCGCTCCAGTCTTACTATTTTTCTTGATTATGCAACGGTATATTGTTCCTTCTGAAGCTGGGA
GCGGATTAAAAGGGTAG

Upstream 100 bases:

>100_bases
GCTTAGCTACTTATCAATATCAATGCGTCTTTTAGTTTGAGAGCGACAGCTACTTCGGAGACGCTGGTAGGATAATGGGA
TTAATTAAGCCAATAGCCCA

Downstream 100 bases:

>100_bases
TGCCCCCCATGCCTCTCCTATCCTTCTATTTCTCTAGAAATCTTCACAAGATCTACAGTTCCTGTTCCCTCTGAGCATGC
TTTCATAACAAATGAAGATA

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MVLKQNRYWKWLSQGVTYALLGVIALAMLLPLLWLVSTAFKGQEDNIFPVAASKDLSLSPLENIVFFLKQLFPIHPTGHN
FVSVWQQQPFGQYFLNSLFVSSLTVTLNVLFSSLAAYPLARLNFKGKDFIFAVVVSTIMIPFQIVMIPLYVLVVELGLKN
TYLGVIFPAIASAFGIFLLRQAFQGVPKELEEAARIDGCTDLGIWWHIMLPSVRPALVTLAIFVFIGSWGEFLWPLIILD
QPEYYTLPLAVSNLFSAFGLNWRLIAAGSVISIAPVLLFFLIMQRYIVPSEAGSGLKG

Sequences:

>Translated_298_residues
MVLKQNRYWKWLSQGVTYALLGVIALAMLLPLLWLVSTAFKGQEDNIFPVAASKDLSLSPLENIVFFLKQLFPIHPTGHN
FVSVWQQQPFGQYFLNSLFVSSLTVTLNVLFSSLAAYPLARLNFKGKDFIFAVVVSTIMIPFQIVMIPLYVLVVELGLKN
TYLGVIFPAIASAFGIFLLRQAFQGVPKELEEAARIDGCTDLGIWWHIMLPSVRPALVTLAIFVFIGSWGEFLWPLIILD
QPEYYTLPLAVSNLFSAFGLNWRLIAAGSVISIAPVLLFFLIMQRYIVPSEAGSGLKG
>Mature_298_residues
MVLKQNRYWKWLSQGVTYALLGVIALAMLLPLLWLVSTAFKGQEDNIFPVAASKDLSLSPLENIVFFLKQLFPIHPTGHN
FVSVWQQQPFGQYFLNSLFVSSLTVTLNVLFSSLAAYPLARLNFKGKDFIFAVVVSTIMIPFQIVMIPLYVLVVELGLKN
TYLGVIFPAIASAFGIFLLRQAFQGVPKELEEAARIDGCTDLGIWWHIMLPSVRPALVTLAIFVFIGSWGEFLWPLIILD
QPEYYTLPLAVSNLFSAFGLNWRLIAAGSVISIAPVLLFFLIMQRYIVPSEAGSGLKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=293, Percent_Identity=28.3276450511945, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789860, Length=206, Percent_Identity=29.126213592233, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790464, Length=210, Percent_Identity=29.0476190476191, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33267; Mature: 33267

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLKQNRYWKWLSQGVTYALLGVIALAMLLPLLWLVSTAFKGQEDNIFPVAASKDLSLSP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCH
LENIVFFLKQLFPIHPTGHNFVSVWQQQPFGQYFLNSLFVSSLTVTLNVLFSSLAAYPLA
HHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLNFKGKDFIFAVVVSTIMIPFQIVMIPLYVLVVELGLKNTYLGVIFPAIASAFGIFLLR
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
QAFQGVPKELEEAARIDGCTDLGIWWHIMLPSVRPALVTLAIFVFIGSWGEFLWPLIILD
HHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
QPEYYTLPLAVSNLFSAFGLNWRLIAAGSVISIAPVLLFFLIMQRYIVPSEAGSGLKG
CCCCEEHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MVLKQNRYWKWLSQGVTYALLGVIALAMLLPLLWLVSTAFKGQEDNIFPVAASKDLSLSP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCH
LENIVFFLKQLFPIHPTGHNFVSVWQQQPFGQYFLNSLFVSSLTVTLNVLFSSLAAYPLA
HHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLNFKGKDFIFAVVVSTIMIPFQIVMIPLYVLVVELGLKNTYLGVIFPAIASAFGIFLLR
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
QAFQGVPKELEEAARIDGCTDLGIWWHIMLPSVRPALVTLAIFVFIGSWGEFLWPLIILD
HHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
QPEYYTLPLAVSNLFSAFGLNWRLIAAGSVISIAPVLLFFLIMQRYIVPSEAGSGLKG
CCCCEEHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]