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The map label for this gene is cph2 [H]

Identifier: 158337434

GI number: 158337434

Start: 4335760

End: 4337004

Strand: Direct

Name: cph2 [H]

Synonym: AM1_4314

Alternate gene names: 158337434

Gene position: 4335760-4337004 (Clockwise)

Preceding gene: 158337427

Following gene: 158337436

Centisome position: 66.67

GC content: 49.56

Gene sequence:

>1245_bases
ATGGGTACGGGGGTTGCCCTCTCGGGCACCTTTGAGTTATCGGCAGATTTAGTGGATGCCCAAGCACTTCAACATGCGCG
GGTTTCTGTGAATACGGTTAAGGAAGCTTGGCTCCTTTATAGCCAGTCTGTGGTGGGGCGCCTGGATGATGTAGATAATG
TGACGGCAAGTCCTGAATACCATCAAATGGCAGGTGGTGTTCCAGTGCCTGCGACTTTCACAATTGAGTTGGGAGAACGG
GTCAGCCAATCGGAAAGTGGTCTATCTTTTCGCTTGTTTAGTAACTACCCCTTTCCCAATCGCCAAGGGTCAGGGGGACC
CCAAAATATATTTGAACAGAAGGCGCTGAAGTATTTACAGCGAAACCCGACTGGCTTCTACTACCAAAAAGCGAAAGAGA
AGGATCACCTTTTGTTTCGCTATGCCGAAGCCGTCCAAATGGAACCGAGCTGTGTCAAGTGTCATAACACTTGGCCAGGG
AGTCCTAAAACCGATTGGCAGGTGGGCGATGTACGAGGAGTTCTAGAAATCACTCAGCCCATTGATGCCTTTGTGGCTCA
GGCGCAAGAGGGGTTAAAGAGTATCTGGACCACATTGATTGTGATTGGCTGTCTGGCGGTCACCAGCCTGATCCTAGTGA
TTAGCTACTTACAGAATAGTAATCAAATTTTGCAGGCTAAGGTTGAGGCAAAGACCGCTGCCCTAAATCGACTGGCCCAT
CTGGATGGCTTGACTGAACTGGCTAATCGGCGGTGTTTTGATCAGGTATTGGAGCAAGAATGGCGACGTATGCAGCGCCA
ACAGAAGCCTTTGGCTTTGATTATGTGTGATGCTGATTATTTCAAACGCTTTAATGATGCCTATGGTCATCAAGCAGGGG
ATCACTGTCTCCAAAAGATTGCTTGTGTCATCAACGCCAACGTCAGGCGGACGGGAGATTTAGCGACTCGTTATGGGGGC
GAAGAGTTTGCAGTGATCATGCCCAATACCGATCATAAGCAGGCCTGTCTGGTGGCGGAAAAAATCCAGCGGGCGATGCT
TGATTTGCGAATTGAGCATTTGCAGTCTGAGGTGGCCGATCATGTCACTTTGAGTATTGGGATTGCGAGCACTGTGCCCC
AACCTATTTATCACCCCACTCACTTGGTGGCGGTTGCGGATGCAGCTCTGTATGAGGCCAAGGTCAATGGCCGCAATCAA
ATTATTGTTAAACTTCCTGAGATAGTGGCAAGTCGGCGGACTTAG

Upstream 100 bases:

>100_bases
AGGCTGAACTTTTGGGGGCTTGTCTAATTTGCAGCGATTTCGAAAGCTAACACTTTGGTTGTATCAACGGATAGCACTGA
TCCTGGTGCTGCTGCTTTGT

Downstream 100 bases:

>100_bases
CTTCTGAGGCTCACCTTGAACTGCTTTTCTAGGGCGTTACGCACCTTTTGGTGGATGGGGTTGACCTCTTCGTCCGTGAG
GGTGCGATCGCACGCCTGAT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MGTGVALSGTFELSADLVDAQALQHARVSVNTVKEAWLLYSQSVVGRLDDVDNVTASPEYHQMAGGVPVPATFTIELGER
VSQSESGLSFRLFSNYPFPNRQGSGGPQNIFEQKALKYLQRNPTGFYYQKAKEKDHLLFRYAEAVQMEPSCVKCHNTWPG
SPKTDWQVGDVRGVLEITQPIDAFVAQAQEGLKSIWTTLIVIGCLAVTSLILVISYLQNSNQILQAKVEAKTAALNRLAH
LDGLTELANRRCFDQVLEQEWRRMQRQQKPLALIMCDADYFKRFNDAYGHQAGDHCLQKIACVINANVRRTGDLATRYGG
EEFAVIMPNTDHKQACLVAEKIQRAMLDLRIEHLQSEVADHVTLSIGIASTVPQPIYHPTHLVAVADAALYEAKVNGRNQ
IIVKLPEIVASRRT

Sequences:

>Translated_414_residues
MGTGVALSGTFELSADLVDAQALQHARVSVNTVKEAWLLYSQSVVGRLDDVDNVTASPEYHQMAGGVPVPATFTIELGER
VSQSESGLSFRLFSNYPFPNRQGSGGPQNIFEQKALKYLQRNPTGFYYQKAKEKDHLLFRYAEAVQMEPSCVKCHNTWPG
SPKTDWQVGDVRGVLEITQPIDAFVAQAQEGLKSIWTTLIVIGCLAVTSLILVISYLQNSNQILQAKVEAKTAALNRLAH
LDGLTELANRRCFDQVLEQEWRRMQRQQKPLALIMCDADYFKRFNDAYGHQAGDHCLQKIACVINANVRRTGDLATRYGG
EEFAVIMPNTDHKQACLVAEKIQRAMLDLRIEHLQSEVADHVTLSIGIASTVPQPIYHPTHLVAVADAALYEAKVNGRNQ
IIVKLPEIVASRRT
>Mature_413_residues
GTGVALSGTFELSADLVDAQALQHARVSVNTVKEAWLLYSQSVVGRLDDVDNVTASPEYHQMAGGVPVPATFTIELGERV
SQSESGLSFRLFSNYPFPNRQGSGGPQNIFEQKALKYLQRNPTGFYYQKAKEKDHLLFRYAEAVQMEPSCVKCHNTWPGS
PKTDWQVGDVRGVLEITQPIDAFVAQAQEGLKSIWTTLIVIGCLAVTSLILVISYLQNSNQILQAKVEAKTAALNRLAHL
DGLTELANRRCFDQVLEQEWRRMQRQQKPLALIMCDADYFKRFNDAYGHQAGDHCLQKIACVINANVRRTGDLATRYGGE
EFAVIMPNTDHKQACLVAEKIQRAMLDLRIEHLQSEVADHVTLSIGIASTVPQPIYHPTHLVAVADAALYEAKVNGRNQI
IVKLPEIVASRRT

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=34.1317365269461, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=34.5454545454545, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082007, Length=211, Percent_Identity=31.7535545023697, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786584, Length=161, Percent_Identity=33.5403726708075, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=34.5238095238095, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=188, Percent_Identity=30.3191489361702, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=31.5789473684211, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787541, Length=175, Percent_Identity=32, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788085, Length=200, Percent_Identity=29.5, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787056, Length=171, Percent_Identity=29.8245614035088, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081974, Length=157, Percent_Identity=29.2993630573248, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788956, Length=174, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 46016; Mature: 45885

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTGVALSGTFELSADLVDAQALQHARVSVNTVKEAWLLYSQSVVGRLDDVDNVTASPEY
CCCCEEEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
HQMAGGVPVPATFTIELGERVSQSESGLSFRLFSNYPFPNRQGSGGPQNIFEQKALKYLQ
HHHCCCCCCCEEEEEEHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
RNPTGFYYQKAKEKDHLLFRYAEAVQMEPSCVKCHNTWPGSPKTDWQVGDVRGVLEITQP
CCCCCEEHHHCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCEECCHHHHHHHHHH
IDAFVAQAQEGLKSIWTTLIVIGCLAVTSLILVISYLQNSNQILQAKVEAKTAALNRLAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LDGLTELANRRCFDQVLEQEWRRMQRQQKPLALIMCDADYFKRFNDAYGHQAGDHCLQKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHH
ACVINANVRRTGDLATRYGGEEFAVIMPNTDHKQACLVAEKIQRAMLDLRIEHLQSEVAD
HHHHCCCCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HVTLSIGIASTVPQPIYHPTHLVAVADAALYEAKVNGRNQIIVKLPEIVASRRT
HEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCC
>Mature Secondary Structure 
GTGVALSGTFELSADLVDAQALQHARVSVNTVKEAWLLYSQSVVGRLDDVDNVTASPEY
CCCEEEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
HQMAGGVPVPATFTIELGERVSQSESGLSFRLFSNYPFPNRQGSGGPQNIFEQKALKYLQ
HHHCCCCCCCEEEEEEHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
RNPTGFYYQKAKEKDHLLFRYAEAVQMEPSCVKCHNTWPGSPKTDWQVGDVRGVLEITQP
CCCCCEEHHHCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCEECCHHHHHHHHHH
IDAFVAQAQEGLKSIWTTLIVIGCLAVTSLILVISYLQNSNQILQAKVEAKTAALNRLAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LDGLTELANRRCFDQVLEQEWRRMQRQQKPLALIMCDADYFKRFNDAYGHQAGDHCLQKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHH
ACVINANVRRTGDLATRYGGEEFAVIMPNTDHKQACLVAEKIQRAMLDLRIEHLQSEVAD
HHHHCCCCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HVTLSIGIASTVPQPIYHPTHLVAVADAALYEAKVNGRNQIIVKLPEIVASRRT
HEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]