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The map label for this gene is ychA [C]

Identifier: 158337334

GI number: 158337334

Start: 4233275

End: 4234096

Strand: Reverse

Name: ychA [C]

Synonym: AM1_4212

Alternate gene names: 158337334

Gene position: 4234096-4233275 (Counterclockwise)

Preceding gene: 158337335

Following gene: 158337333

Centisome position: 65.1

GC content: 45.74

Gene sequence:

>822_bases
ATGAAGTTCTCGGCTCCTCGTCAACAGCTCTATCATTTGCTCCGTCAATCGTCTGAGCCAGATTTGGCTGCGGCTGCACT
TTATATTGCTCAGGAAGAGTATCCCGCTTTAGCGGTTGATGAATATCTCAATGCCCTGGACACGATGGCGGGAGAAGTCG
AAGAACGACTGCCTGCTGATCCATACCCTTTAAAAGTCCTGCAAACCCTGAATCGTTATCTATACGAGGATCTTGGCTTT
ACGGGCAACAGTCAACATTACTACGATCCCCGCAATAGCTTCCTCAATGATGTCTTGGATCGGCGGTTAGGCATTCCTAT
TACCCTATCGTTGGTTTATATTGAAATTGCCCGCCGGATCAACTTCCCGATGGAAGGGATTAACTTTCCAGGGCATTTTC
TTGTTCGCCCTACTCGGGATGACATGAATATTTTTGTGGATCCTTTCTATCAGGGAGAGATTTTGTTTGAGCAGGATTGC
CGCGATCGCATCACCCAAGTTTTTGGGCATCCGATGGAGATGAGACCTGAATTCTTTCAGGTGGTTAGTCCCCAGCAGTT
TCTGGTGCGGCTACTGAACAATCTGAAACAAATCTATCTCAATGAAAACCATCTGGAAAAATGCCTCAGCACATCAGAGC
AGATTCTGCTCGTTGATCCGAAGTGTTATAGTGAGCTGCGAGATCGGGGTATCTTGTACTATCATGTAGGCCGTTGGTCC
GAAGCCCGACAAGATTTACAAGATTTTTTAGCCCAAAACCCTTCTCCTGAACATATTTCTTTGGTTCATAAGTTGCTTAA
CCAAATGAGTGATTTTCCCTAA

Upstream 100 bases:

>100_bases
GATTGAAGACGGTGTTGGGGATTTATATCTGCCAGAAATTCCAGTAGAAATTCGCAAATTGACCTATTTGCAATAATTAC
GAGGTAACATCGTGAATACG

Downstream 100 bases:

>100_bases
CATGGCGAAGAGTCTTTTACAATAGGTATTGTTTCTTACTTCACGAATCGATTCCCATTTTTCGGATATAAACGATTCAC
CTAACCTCTGACCTCCTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKFSAPRQQLYHLLRQSSEPDLAAAALYIAQEEYPALAVDEYLNALDTMAGEVEERLPADPYPLKVLQTLNRYLYEDLGF
TGNSQHYYDPRNSFLNDVLDRRLGIPITLSLVYIEIARRINFPMEGINFPGHFLVRPTRDDMNIFVDPFYQGEILFEQDC
RDRITQVFGHPMEMRPEFFQVVSPQQFLVRLLNNLKQIYLNENHLEKCLSTSEQILLVDPKCYSELRDRGILYYHVGRWS
EARQDLQDFLAQNPSPEHISLVHKLLNQMSDFP

Sequences:

>Translated_273_residues
MKFSAPRQQLYHLLRQSSEPDLAAAALYIAQEEYPALAVDEYLNALDTMAGEVEERLPADPYPLKVLQTLNRYLYEDLGF
TGNSQHYYDPRNSFLNDVLDRRLGIPITLSLVYIEIARRINFPMEGINFPGHFLVRPTRDDMNIFVDPFYQGEILFEQDC
RDRITQVFGHPMEMRPEFFQVVSPQQFLVRLLNNLKQIYLNENHLEKCLSTSEQILLVDPKCYSELRDRGILYYHVGRWS
EARQDLQDFLAQNPSPEHISLVHKLLNQMSDFP
>Mature_273_residues
MKFSAPRQQLYHLLRQSSEPDLAAAALYIAQEEYPALAVDEYLNALDTMAGEVEERLPADPYPLKVLQTLNRYLYEDLGF
TGNSQHYYDPRNSFLNDVLDRRLGIPITLSLVYIEIARRINFPMEGINFPGHFLVRPTRDDMNIFVDPFYQGEILFEQDC
RDRITQVFGHPMEMRPEFFQVVSPQQFLVRLLNNLKQIYLNENHLEKCLSTSEQILLVDPKCYSELRDRGILYYHVGRWS
EARQDLQDFLAQNPSPEHISLVHKLLNQMSDFP

Specific function: Unknown

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI16306500, Length=198, Percent_Identity=32.3232323232323, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI16306502, Length=193, Percent_Identity=32.6424870466321, Blast_Score=93, Evalue=3e-19,
Organism=Escherichia coli, GI1787465, Length=239, Percent_Identity=25.9414225941423, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31976; Mature: 31976

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSAPRQQLYHLLRQSSEPDLAAAALYIAQEEYPALAVDEYLNALDTMAGEVEERLPAD
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PYPLKVLQTLNRYLYEDLGFTGNSQHYYDPRNSFLNDVLDRRLGIPITLSLVYIEIARRI
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
NFPMEGINFPGHFLVRPTRDDMNIFVDPFYQGEILFEQDCRDRITQVFGHPMEMRPEFFQ
CCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCEEEHHHHHHHHHHHHCCCHHCCHHHHH
VVSPQQFLVRLLNNLKQIYLNENHLEKCLSTSEQILLVDPKCYSELRDRGILYYHVGRWS
HCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCEEEEECCCHH
EARQDLQDFLAQNPSPEHISLVHKLLNQMSDFP
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKFSAPRQQLYHLLRQSSEPDLAAAALYIAQEEYPALAVDEYLNALDTMAGEVEERLPAD
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PYPLKVLQTLNRYLYEDLGFTGNSQHYYDPRNSFLNDVLDRRLGIPITLSLVYIEIARRI
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
NFPMEGINFPGHFLVRPTRDDMNIFVDPFYQGEILFEQDCRDRITQVFGHPMEMRPEFFQ
CCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCEEEHHHHHHHHHHHHCCCHHCCHHHHH
VVSPQQFLVRLLNNLKQIYLNENHLEKCLSTSEQILLVDPKCYSELRDRGILYYHVGRWS
HCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCEEEEECCCHH
EARQDLQDFLAQNPSPEHISLVHKLLNQMSDFP
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]