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The map label for this gene is yjcF [C]

Identifier: 158337059

GI number: 158337059

Start: 3981742

End: 3982263

Strand: Direct

Name: yjcF [C]

Synonym: AM1_3933

Alternate gene names: 158337059

Gene position: 3981742-3982263 (Clockwise)

Preceding gene: 158337057

Following gene: 158337062

Centisome position: 61.22

GC content: 45.59

Gene sequence:

>522_bases
ATGACCGTTGAAGAACTATTAAAGCGCTATGCCAATGGCGAACGAGATTTTAGTAAATCGAATTTATCAAAGCAGGATTT
AAGCCTAGCTCAGCTCGATCATATTGTTTTACGAGATACCAATTTAAGCCATGCGGCCCTTCATGGGATCGATCTACTGT
GTGCGAACTTATCCGCCGCCAATTTGTCGGCCGCTAAACTCATTGGGGCTAATCTGACAGGGGCAGACCTAACCAAAAGT
AACTTGAGTAATTCTCTCTTGAGTGGCGCCATTTTAGTCGGAGCCTGTCTATCGAAGGCCAACTTGCAACGAGCCTCATT
AAATTACAGCGATCTGAGTGGTGTCAATTTTAGAGATGCAGATCTACAGAACGCGAATTTTAAAGGCGCGAACCTGAGCG
GTGCTGACTTCTTAGGTGCTAACTTAGAGCACATCGATCTAACCGACGCCATCTTGAAAGATACGATTATGCCGGATGGC
AGTATTGCATCCTCATCTGCGGGTTTCGAAGATAACGGCTAG

Upstream 100 bases:

>100_bases
TGAGATCGCACCCCTTTCACCAAAAATCAGCATAAACTCATTTGGTGAGTCCCAACCCCTGGCACAATAAAAACATCGGT
GGGAAGGCGATAATTAGGCT

Downstream 100 bases:

>100_bases
CTCGAAGGGTTAATGCGCATGAGGGTTTGACCAAATTCAATAGGTTCTCCGTTTTCTACGAGAATCTCAACGATTTCGCC
ATTCACCTCAGCTTCTAGCT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MTVEELLKRYANGERDFSKSNLSKQDLSLAQLDHIVLRDTNLSHAALHGIDLLCANLSAANLSAAKLIGANLTGADLTKS
NLSNSLLSGAILVGACLSKANLQRASLNYSDLSGVNFRDADLQNANFKGANLSGADFLGANLEHIDLTDAILKDTIMPDG
SIASSSAGFEDNG

Sequences:

>Translated_173_residues
MTVEELLKRYANGERDFSKSNLSKQDLSLAQLDHIVLRDTNLSHAALHGIDLLCANLSAANLSAAKLIGANLTGADLTKS
NLSNSLLSGAILVGACLSKANLQRASLNYSDLSGVNFRDADLQNANFKGANLSGADFLGANLEHIDLTDAILKDTIMPDG
SIASSSAGFEDNG
>Mature_172_residues
TVEELLKRYANGERDFSKSNLSKQDLSLAQLDHIVLRDTNLSHAALHGIDLLCANLSAANLSAAKLIGANLTGADLTKSN
LSNSLLSGAILVGACLSKANLQRASLNYSDLSGVNFRDADLQNANFKGANLSGADFLGANLEHIDLTDAILKDTIMPDGS
IASSSAGFEDNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=144, Percent_Identity=35.4166666666667, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221377802, Length=144, Percent_Identity=34.0277777777778, Blast_Score=70, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 18132; Mature: 18001

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVEELLKRYANGERDFSKSNLSKQDLSLAQLDHIVLRDTNLSHAALHGIDLLCANLSAA
CCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCCC
NLSAAKLIGANLTGADLTKSNLSNSLLSGAILVGACLSKANLQRASLNYSDLSGVNFRDA
CCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DLQNANFKGANLSGADFLGANLEHIDLTDAILKDTIMPDGSIASSSAGFEDNG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TVEELLKRYANGERDFSKSNLSKQDLSLAQLDHIVLRDTNLSHAALHGIDLLCANLSAA
CHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCCC
NLSAAKLIGANLTGADLTKSNLSNSLLSGAILVGACLSKANLQRASLNYSDLSGVNFRDA
CCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DLQNANFKGANLSGADFLGANLEHIDLTDAILKDTIMPDGSIASSSAGFEDNG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]