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The map label for this gene is yjcF [C]

Identifier: 158337026

GI number: 158337026

Start: 3947639

End: 3948301

Strand: Direct

Name: yjcF [C]

Synonym: AM1_3899

Alternate gene names: 158337026

Gene position: 3947639-3948301 (Clockwise)

Preceding gene: 158337025

Following gene: 158337027

Centisome position: 60.7

GC content: 47.06

Gene sequence:

>663_bases
ATGGGGGATTCTATCCAGGCCTCGTTGTTAGACTGTAAAGCCATGCTAGTTGACCTTCACTCCGACTCCCTCATTGAACA
ATATGCGAACGGTATCCGAGACTTTAGCTCCACAATTTTGACCGGGGATAGTCTGTGTGAACTGTTGCTAAATGGTATTA
ATTTTGAACAGGCAAACCTAGCTCGGGTCAATATGAGCCTGACCCAATTCCGCGGGAGTAACCTCAGAGGCGCGAATTTA
TCCCAGGGACTACTGTGGCGTACAGACTTTATGGATGCCTGTTTAGAAGTGGCTAACTTAAGTCAATCCAAGCTAATTCG
AGCAACTTTAACACGAGCTAACTTAAGGCAAGCTCTACTGGCAAAAGCAGATCTCAGGGTTGCGAATCTACGAGCAGCCA
ATTGTCCAGGGGCAAATCTGGCAGGAGCGGATCTTCGCTATGCTGACCTGACTGGCATTAACCTCAGTGGTGCAAACCTC
AGTGGTGCTGACTTAACTGGTGCTGATTTAACCGGTGCTGATCTAAGTGGGGCCATTTTAACCGGCACTATTCTTAGGCA
AGTAGATTTAAGTCAGGTGATCCTACAGGATGTAGACTGGAACCATCGCCACATGGACGTTCTAGAAAACAATCCAGTGT
TGACTGCGACTGAAAAGAAGTAA

Upstream 100 bases:

>100_bases
CTAGCCACAAACCTCAACTTCATCCAAATCGTGACGGGTGTCTAACAACTGATCCAATTGATTAGATCCTCATCTGCAAG
TAGGTGGGGGTCTGCCTTGG

Downstream 100 bases:

>100_bases
TTGAGCAGCGACTATAATTTGAGGACGTAGCGATGTGCGATCGCGTCCTCTATGCTTACCCTTCGAGATTATGCCAATTC
AGATATTGAGGCGTTGGTAG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MGDSIQASLLDCKAMLVDLHSDSLIEQYANGIRDFSSTILTGDSLCELLLNGINFEQANLARVNMSLTQFRGSNLRGANL
SQGLLWRTDFMDACLEVANLSQSKLIRATLTRANLRQALLAKADLRVANLRAANCPGANLAGADLRYADLTGINLSGANL
SGADLTGADLTGADLSGAILTGTILRQVDLSQVILQDVDWNHRHMDVLENNPVLTATEKK

Sequences:

>Translated_220_residues
MGDSIQASLLDCKAMLVDLHSDSLIEQYANGIRDFSSTILTGDSLCELLLNGINFEQANLARVNMSLTQFRGSNLRGANL
SQGLLWRTDFMDACLEVANLSQSKLIRATLTRANLRQALLAKADLRVANLRAANCPGANLAGADLRYADLTGINLSGANL
SGADLTGADLTGADLSGAILTGTILRQVDLSQVILQDVDWNHRHMDVLENNPVLTATEKK
>Mature_219_residues
GDSIQASLLDCKAMLVDLHSDSLIEQYANGIRDFSSTILTGDSLCELLLNGINFEQANLARVNMSLTQFRGSNLRGANLS
QGLLWRTDFMDACLEVANLSQSKLIRATLTRANLRQALLAKADLRVANLRAANCPGANLAGADLRYADLTGINLSGANLS
GADLTGADLTGADLSGAILTGTILRQVDLSQVILQDVDWNHRHMDVLENNPVLTATEKK

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=176, Percent_Identity=31.25, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI221377802, Length=162, Percent_Identity=33.9506172839506, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 23624; Mature: 23493

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDSIQASLLDCKAMLVDLHSDSLIEQYANGIRDFSSTILTGDSLCELLLNGINFEQANL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
ARVNMSLTQFRGSNLRGANLSQGLLWRTDFMDACLEVANLSQSKLIRATLTRANLRQALL
EEEEHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AKADLRVANLRAANCPGANLAGADLRYADLTGINLSGANLSGADLTGADLTGADLSGAIL
HHHCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
TGTILRQVDLSQVILQDVDWNHRHMDVLENNPVLTATEKK
HHHHHHHHHHHHHHHHCCCCCCCEEHHCCCCCEEEECCCC
>Mature Secondary Structure 
GDSIQASLLDCKAMLVDLHSDSLIEQYANGIRDFSSTILTGDSLCELLLNGINFEQANL
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
ARVNMSLTQFRGSNLRGANLSQGLLWRTDFMDACLEVANLSQSKLIRATLTRANLRQALL
EEEEHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AKADLRVANLRAANCPGANLAGADLRYADLTGINLSGANLSGADLTGADLTGADLSGAIL
HHHCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
TGTILRQVDLSQVILQDVDWNHRHMDVLENNPVLTATEKK
HHHHHHHHHHHHHHHHCCCCCCCEEHHCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA