Click here to switch to the map view.

The map label for this gene is tnpA [H]

Identifier: 158336990

GI number: 158336990

Start: 3914003

End: 3915220

Strand: Reverse

Name: tnpA [H]

Synonym: AM1_3863

Alternate gene names: 158336990

Gene position: 3915220-3914003 (Counterclockwise)

Preceding gene: 158336991

Following gene: 158336989

Centisome position: 60.2

GC content: 50.08

Gene sequence:

>1218_bases
GTGAAAACCAACTTCTCTCAAATCATTACTCCTCATTGCCATGCAACTGCCCATGCCATCACCGAGGAAGAGATTACCTT
GTGCGTGGGTGATACGAGCTTTTTAGACTACGGAGGCATCAAGAAGAAGCGTCAAGGCTATGGTCCTCAAGGCAATGGGG
GGAATGGCTTATTGCTCCACAGTGCCTTAGCTGTTGACCCCGAGCAAGGCCAACCATTGGGGTTGCTATGGCAAAAGGTA
TGGAATCGTCAGCATCGACCCCAGCCTCCGAAAAAGGAAACCCCTCGACAAAAGAAGAAGCGTCAGGCAAAGGCGCGACA
AACTTCTCGGAACCGACCCTTTGAACAAAAGGCATCCTATCGGTGGGTCGAAGCGATGCAAGCCGTAGAAAAGATAGTGA
GTCCTTCTACTCGTTCCATTCATGTGTTTGACCGAGAAGGAGATATTGCCGAAGTGTTTGAGCGGCTCAATCACCTCAAC
AACACAGGGGTTGTGGTTAGAGCCTCACATAATCGTCGGCTTGAGCAAGACCCCAATCGACTGTGGAAAAAACTGGAAGC
CCAAAGTATTCAATTCGAGTATGAAATTGACTTACCCAAAACGAAAGACCGGAGTGCACGTATAGCCAAGCTAGTGGTGC
GCTGTTGTCTCGTCCAACTGCAGCGACCTACCCGTCTAGCTGATAGTCATCCCCTCCAGGTATACGCCGTCTATGCCACA
GAAGTAGATCCCCCAGAGGATGAAGACCCAGTGTCATGGATGTTGCTCACGAGTGAAGCAGTCACCACTATGGAAATGGC
TCAGACCATTTTGCGCTGGTACACGTACAGGTGGAGAGTGGAGGAATATCACAAAATTCTCAAATCGGGGACTCAGGTGG
AGCGGTATCGTTTGGCTGCTGAGGGGATGAAAACCTTATTAGGATTCCTGTGTGTCACTGCTGTAGAACTGTTACGCTGG
ACCTACTTAGAACGCACATCCCCTCAACGGCCTGCTCAAGATGTCGTCACACCTTTACAGATTAAAGTTCTCAGAGCGAA
GACATCGAAGGTTCCCAAAAACCTCACGGTTGCATGGGCAGTGAAAGCAGTTGCACGACTTGGAGGATATCTGGAGCATC
GTCGCAACACACCGATGGGGATTCAAGTGCTTTGGAAAGGATGGGCTAAGTTAAATCTCCTAGTCGAGGGCTGGCAGTTA
GCGACCCAGGAGACTTAG

Upstream 100 bases:

>100_bases
TCAAAATTGGTCAAGCGATTAGTGCAAACTTCGGCCAAGCCCTGTTGAGCATTTTCAAGACTGCAACAGATCTCAAACGC
TCTTATGAGTTTTCGCTAAT

Downstream 100 bases:

>100_bases
CGGGAAAAGTCAGGGTGAGACAGTTGCAGCAGGACTATTCCATTCGCCAAATTTGTCAGGTACTCAATTACCCACGCTCT
CAAGTGTATTACCATGCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: Tnp [H]

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKTNFSQIITPHCHATAHAITEEEITLCVGDTSFLDYGGIKKKRQGYGPQGNGGNGLLLHSALAVDPEQGQPLGLLWQKV
WNRQHRPQPPKKETPRQKKKRQAKARQTSRNRPFEQKASYRWVEAMQAVEKIVSPSTRSIHVFDREGDIAEVFERLNHLN
NTGVVVRASHNRRLEQDPNRLWKKLEAQSIQFEYEIDLPKTKDRSARIAKLVVRCCLVQLQRPTRLADSHPLQVYAVYAT
EVDPPEDEDPVSWMLLTSEAVTTMEMAQTILRWYTYRWRVEEYHKILKSGTQVERYRLAAEGMKTLLGFLCVTAVELLRW
TYLERTSPQRPAQDVVTPLQIKVLRAKTSKVPKNLTVAWAVKAVARLGGYLEHRRNTPMGIQVLWKGWAKLNLLVEGWQL
ATQET

Sequences:

>Translated_405_residues
MKTNFSQIITPHCHATAHAITEEEITLCVGDTSFLDYGGIKKKRQGYGPQGNGGNGLLLHSALAVDPEQGQPLGLLWQKV
WNRQHRPQPPKKETPRQKKKRQAKARQTSRNRPFEQKASYRWVEAMQAVEKIVSPSTRSIHVFDREGDIAEVFERLNHLN
NTGVVVRASHNRRLEQDPNRLWKKLEAQSIQFEYEIDLPKTKDRSARIAKLVVRCCLVQLQRPTRLADSHPLQVYAVYAT
EVDPPEDEDPVSWMLLTSEAVTTMEMAQTILRWYTYRWRVEEYHKILKSGTQVERYRLAAEGMKTLLGFLCVTAVELLRW
TYLERTSPQRPAQDVVTPLQIKVLRAKTSKVPKNLTVAWAVKAVARLGGYLEHRRNTPMGIQVLWKGWAKLNLLVEGWQL
ATQET
>Mature_405_residues
MKTNFSQIITPHCHATAHAITEEEITLCVGDTSFLDYGGIKKKRQGYGPQGNGGNGLLLHSALAVDPEQGQPLGLLWQKV
WNRQHRPQPPKKETPRQKKKRQAKARQTSRNRPFEQKASYRWVEAMQAVEKIVSPSTRSIHVFDREGDIAEVFERLNHLN
NTGVVVRASHNRRLEQDPNRLWKKLEAQSIQFEYEIDLPKTKDRSARIAKLVVRCCLVQLQRPTRLADSHPLQVYAVYAT
EVDPPEDEDPVSWMLLTSEAVTTMEMAQTILRWYTYRWRVEEYHKILKSGTQVERYRLAAEGMKTLLGFLCVTAVELLRW
TYLERTSPQRPAQDVVTPLQIKVLRAKTSKVPKNLTVAWAVKAVARLGGYLEHRRNTPMGIQVLWKGWAKLNLLVEGWQL
ATQET

Specific function: Mediates transposition of transposon Tn5 by a 'cut and paste' mechanism. First, the monomeric transposase binds the 19 bp inverted DNA repeats flanking the transposon. Then, dimerization of the DNA-bound transposase creates a synaptic DNA complex. After n

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR002559
- InterPro:   IPR003201
- InterPro:   IPR014737
- InterPro:   IPR014736
- InterPro:   IPR014735 [H]

Pfam domain/function: PF01609 Transposase_11; PF02281 Transposase_Tn5 [H]

EC number: NA

Molecular weight: Translated: 46570; Mature: 46570

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTNFSQIITPHCHATAHAITEEEITLCVGDTSFLDYGGIKKKRQGYGPQGNGGNGLLLH
CCCCHHHHCCCCCHHHHHHCCCCCEEEEECCCCHHCCCCCCHHHCCCCCCCCCCCEEEEE
SALAVDPEQGQPLGLLWQKVWNRQHRPQPPKKETPRQKKKRQAKARQTSRNRPFEQKASY
HEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
RWVEAMQAVEKIVSPSTRSIHVFDREGDIAEVFERLNHLNNTGVVVRASHNRRLEQDPNR
HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
LWKKLEAQSIQFEYEIDLPKTKDRSARIAKLVVRCCLVQLQRPTRLADSHPLQVYAVYAT
HHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEE
EVDPPEDEDPVSWMLLTSEAVTTMEMAQTILRWYTYRWRVEEYHKILKSGTQVERYRLAA
CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCHHHHHHHHH
EGMKTLLGFLCVTAVELLRWTYLERTSPQRPAQDVVTPLQIKVLRAKTSKVPKNLTVAWA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHEEEHHHHHCCCCCCHHHHH
VKAVARLGGYLEHRRNTPMGIQVLWKGWAKLNLLVEGWQLATQET
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEECEECCCCCC
>Mature Secondary Structure
MKTNFSQIITPHCHATAHAITEEEITLCVGDTSFLDYGGIKKKRQGYGPQGNGGNGLLLH
CCCCHHHHCCCCCHHHHHHCCCCCEEEEECCCCHHCCCCCCHHHCCCCCCCCCCCEEEEE
SALAVDPEQGQPLGLLWQKVWNRQHRPQPPKKETPRQKKKRQAKARQTSRNRPFEQKASY
HEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
RWVEAMQAVEKIVSPSTRSIHVFDREGDIAEVFERLNHLNNTGVVVRASHNRRLEQDPNR
HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
LWKKLEAQSIQFEYEIDLPKTKDRSARIAKLVVRCCLVQLQRPTRLADSHPLQVYAVYAT
HHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEE
EVDPPEDEDPVSWMLLTSEAVTTMEMAQTILRWYTYRWRVEEYHKILKSGTQVERYRLAA
CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCHHHHHHHHH
EGMKTLLGFLCVTAVELLRWTYLERTSPQRPAQDVVTPLQIKVLRAKTSKVPKNLTVAWA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHEEEHHHHHCCCCCCHHHHH
VKAVARLGGYLEHRRNTPMGIQVLWKGWAKLNLLVEGWQLATQET
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEECEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6260374; 6271452; 7867940; 6291786; 10884228; 12367522; 11896402 [H]