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The map label for this gene is nusB

Identifier: 158336915

GI number: 158336915

Start: 3840694

End: 3841311

Strand: Direct

Name: nusB

Synonym: AM1_3786

Alternate gene names: 158336915

Gene position: 3840694-3841311 (Clockwise)

Preceding gene: 158336911

Following gene: 158336916

Centisome position: 59.05

GC content: 49.19

Gene sequence:

>618_bases
ATGCAACCTCGCCGAATTGCCCGTGAATTGGCACTTTTAAGTATTGGTCAATTGCCTAGCAATTCCGATCGCCTCGCCAA
CCAAGATTTGCAAGCTGTGATGATTACGGCGGTACGGACCCTGGTGGCTGAAGTGCAAGAAGCACTAGAAACGGCAAGTG
CTGAACTAAAACGGGGTAGCGATCGCATCCTCGATAGCGAACTCAAAGCCATTGATGTGCAGAGTTCGCGGGCGATGGTC
ACCGAAGCCATTGACCTCACCAAAACAGCCGTCAACCGCTTAGGGCTAGCGATTGACTTTCCCGAATTTATCCAGCTGGC
CAATCAACAGTCAGTCCGAGACTACACCCTCGACTTAATTGGAGCCGTTCACCATCATCGTGACGAAATTGACCAAATCC
TAGAAACATCCTTGGTAGATTGGCAGCTCCATCGATTAGCCCATATCGATGCCAATTTGTTGCGGTTGGCCGTTGCTGAA
ATGAAGTATTTGGATATTCCCAATCAAGTAGCGATTAACGAATCTGTCGAGCTGGCCAAAAAATATAGCGCCGAAGAGGG
TCATCGCTTTATTAATGGTGTTTTGCGGCGGGTAACCCGTCAGATCGCGGTACCTTAA

Upstream 100 bases:

>100_bases
ACCTCAAGCCTGTCGACTAGAGATAGTGTAAGCCGCCAATGCTGAAATTGAACGCTGGATATTAAGATTAGAGAGTTCTG
CAAGCCGTCCCTATTTCCCC

Downstream 100 bases:

>100_bases
TATGCGGTAGGTTGAAATCAAATCCGCCCCCATCGTTTCGTTTAGGAAAAGGTCATGGTTTTTAATTGGTTTCGTCGCCA
ATTTAATAAGGAAGAAGCTG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MQPRRIARELALLSIGQLPSNSDRLANQDLQAVMITAVRTLVAEVQEALETASAELKRGSDRILDSELKAIDVQSSRAMV
TEAIDLTKTAVNRLGLAIDFPEFIQLANQQSVRDYTLDLIGAVHHHRDEIDQILETSLVDWQLHRLAHIDANLLRLAVAE
MKYLDIPNQVAINESVELAKKYSAEEGHRFINGVLRRVTRQIAVP

Sequences:

>Translated_205_residues
MQPRRIARELALLSIGQLPSNSDRLANQDLQAVMITAVRTLVAEVQEALETASAELKRGSDRILDSELKAIDVQSSRAMV
TEAIDLTKTAVNRLGLAIDFPEFIQLANQQSVRDYTLDLIGAVHHHRDEIDQILETSLVDWQLHRLAHIDANLLRLAVAE
MKYLDIPNQVAINESVELAKKYSAEEGHRFINGVLRRVTRQIAVP
>Mature_205_residues
MQPRRIARELALLSIGQLPSNSDRLANQDLQAVMITAVRTLVAEVQEALETASAELKRGSDRILDSELKAIDVQSSRAMV
TEAIDLTKTAVNRLGLAIDFPEFIQLANQQSVRDYTLDLIGAVHHHRDEIDQILETSLVDWQLHRLAHIDANLLRLAVAE
MKYLDIPNQVAINESVELAKKYSAEEGHRFINGVLRRVTRQIAVP

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:
GO:0003723: N utilization substance protein B homolog
GO:0006351: N utilization substance protein B homolog
GO:0006353: N utilization substance protein B homolog
GO:0006355: N utilization substance protein B homolog

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_ACAM1 (B0C5Q2)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001518090.1
- ProteinModelPortal:   B0C5Q2
- SMR:   B0C5Q2
- GeneID:   5682591
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_3786
- HOGENOM:   HBG635304
- OMA:   GHRFING
- ProtClustDB:   PRK09634
- BioCyc:   AMAR329726:AM1_3786-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 22975; Mature: 22975

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPRRIARELALLSIGQLPSNSDRLANQDLQAVMITAVRTLVAEVQEALETASAELKRGS
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
DRILDSELKAIDVQSSRAMVTEAIDLTKTAVNRLGLAIDFPEFIQLANQQSVRDYTLDLI
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHH
GAVHHHRDEIDQILETSLVDWQLHRLAHIDANLLRLAVAEMKYLDIPNQVAINESVELAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
KYSAEEGHRFINGVLRRVTRQIAVP
HHCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQPRRIARELALLSIGQLPSNSDRLANQDLQAVMITAVRTLVAEVQEALETASAELKRGS
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
DRILDSELKAIDVQSSRAMVTEAIDLTKTAVNRLGLAIDFPEFIQLANQQSVRDYTLDLI
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHH
GAVHHHRDEIDQILETSLVDWQLHRLAHIDANLLRLAVAEMKYLDIPNQVAINESVELAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
KYSAEEGHRFINGVLRRVTRQIAVP
HHCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA