Click here to switch to the map view.

The map label for this gene is dacB [H]

Identifier: 158336883

GI number: 158336883

Start: 3809644

End: 3810456

Strand: Reverse

Name: dacB [H]

Synonym: AM1_3751

Alternate gene names: 158336883

Gene position: 3810456-3809644 (Counterclockwise)

Preceding gene: 158336884

Following gene: 158336879

Centisome position: 58.59

GC content: 51.05

Gene sequence:

>813_bases
ATGAAAGGGTTCCAAAAAATTTTCGGCCAGTTCCAGTTTGTGGTGATTAGCCTTTTGACCACAGCGGTGATTGTCTGGCT
GGCGGCTAGCCTTCAACTGGTCCCCGCGGATCCACCCGTCTCGCAAGAGCAGTCACCCCAACAACCCGCTCAATCCCCGG
TCGAAACATCCCAACCATTGCCCCCTGCGACAAACCGTCCCCCATCTCCCCTGTATGAGAGCTTGCCCTCCATCTCGAAT
ACTCCCTCTCCAGCTAACGCTCCAGCGGCACCTGTTACTGCTACACCTAAGAATTACTATGGCCACCTTGCCTATGCAGA
AAACGAAGATAACCGACTGGTAAACGTTGGAGAGTTTGTGCGAGGGACGTATCGTCGGTCTGAGTATTTGGATCAAGAAG
CAGCGGCAGCCTTTACCAAGTTGGTTAATGCCGCTGCTGATGCCAATCTCACGCTTCAGCCTATCTCTGGGTTTCGCTCA
GTCAATGACCAAAAAGAACTGTTTGATAAACAGGTACAAAAACTAGGGAGTGTAGAAGCAGCCGCCAAACTTAGTGCCCC
GCCTGGGTTTAGTGAGCATCACACTGGATATGCGATCGATATTGGCGATCGCAACCAGCCGGACAAAGATCTCAAGGTGG
CTTTTGAAGACACAACTGCCTATCGTTGGTTAACCAACAATGCCAAGAACTATGGATTTGAACTCTCATTTCCCCGGAAT
AACGCCCAGGGGGTTAACTTCGAGCCTTGGCATTGGCGATATATCGGCACTTCTCGGGCAGCAGTACAGTTTGCTAGCGC
ACGTAATCTCTAA

Upstream 100 bases:

>100_bases
GGCTGGATTGCCGCTCAACTCATTCAACGAGATTAGACGCTAAAGTTTCTGCTCTCGATTATTGTGATTACTGTCTATCA
ATGGGGCAGCAAATAGACTT

Downstream 100 bases:

>100_bases
CTATTGCTTTTGGCAGATGGCCAAGAGAGCTGCCGACAGAATCTTAAAACTGTCAGGAGTAGTGAGTCATCATCTTTCCA
ATAGCCCTGATGTCTCTTCA

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKGFQKIFGQFQFVVISLLTTAVIVWLAASLQLVPADPPVSQEQSPQQPAQSPVETSQPLPPATNRPPSPLYESLPSISN
TPSPANAPAAPVTATPKNYYGHLAYAENEDNRLVNVGEFVRGTYRRSEYLDQEAAAAFTKLVNAAADANLTLQPISGFRS
VNDQKELFDKQVQKLGSVEAAAKLSAPPGFSEHHTGYAIDIGDRNQPDKDLKVAFEDTTAYRWLTNNAKNYGFELSFPRN
NAQGVNFEPWHWRYIGTSRAAVQFASARNL

Sequences:

>Translated_270_residues
MKGFQKIFGQFQFVVISLLTTAVIVWLAASLQLVPADPPVSQEQSPQQPAQSPVETSQPLPPATNRPPSPLYESLPSISN
TPSPANAPAAPVTATPKNYYGHLAYAENEDNRLVNVGEFVRGTYRRSEYLDQEAAAAFTKLVNAAADANLTLQPISGFRS
VNDQKELFDKQVQKLGSVEAAAKLSAPPGFSEHHTGYAIDIGDRNQPDKDLKVAFEDTTAYRWLTNNAKNYGFELSFPRN
NAQGVNFEPWHWRYIGTSRAAVQFASARNL
>Mature_270_residues
MKGFQKIFGQFQFVVISLLTTAVIVWLAASLQLVPADPPVSQEQSPQQPAQSPVETSQPLPPATNRPPSPLYESLPSISN
TPSPANAPAAPVTATPKNYYGHLAYAENEDNRLVNVGEFVRGTYRRSEYLDQEAAAAFTKLVNAAADANLTLQPISGFRS
VNDQKELFDKQVQKLGSVEAAAKLSAPPGFSEHHTGYAIDIGDRNQPDKDLKVAFEDTTAYRWLTNNAKNYGFELSFPRN
NAQGVNFEPWHWRYIGTSRAAVQFASARNL

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 29666; Mature: 29666

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGFQKIFGQFQFVVISLLTTAVIVWLAASLQLVPADPPVSQEQSPQQPAQSPVETSQPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
PPATNRPPSPLYESLPSISNTPSPANAPAAPVTATPKNYYGHLAYAENEDNRLVNVGEFV
CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHH
RGTYRRSEYLDQEAAAAFTKLVNAAADANLTLQPISGFRSVNDQKELFDKQVQKLGSVEA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHHHHCCHHH
AAKLSAPPGFSEHHTGYAIDIGDRNQPDKDLKVAFEDTTAYRWLTNNAKNYGFELSFPRN
HHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEECCCCCCCCEEEECCCC
NAQGVNFEPWHWRYIGTSRAAVQFASARNL
CCCCCCCCCCEEEEECCCHHHHHHHHHCCC
>Mature Secondary Structure
MKGFQKIFGQFQFVVISLLTTAVIVWLAASLQLVPADPPVSQEQSPQQPAQSPVETSQPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
PPATNRPPSPLYESLPSISNTPSPANAPAAPVTATPKNYYGHLAYAENEDNRLVNVGEFV
CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHH
RGTYRRSEYLDQEAAAAFTKLVNAAADANLTLQPISGFRSVNDQKELFDKQVQKLGSVEA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHHHHCCHHH
AAKLSAPPGFSEHHTGYAIDIGDRNQPDKDLKVAFEDTTAYRWLTNNAKNYGFELSFPRN
HHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEECCCCCCCCEEEECCCC
NAQGVNFEPWHWRYIGTSRAAVQFASARNL
CCCCCCCCCCEEEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]