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The map label for this gene is ybiA [H]

Identifier: 158336844

GI number: 158336844

Start: 3770344

End: 3770784

Strand: Direct

Name: ybiA [H]

Synonym: AM1_3712

Alternate gene names: 158336844

Gene position: 3770344-3770784 (Clockwise)

Preceding gene: 158336842

Following gene: 158336845

Centisome position: 57.97

GC content: 46.94

Gene sequence:

>441_bases
ATGGCAATTTACTTCTATTCAAGTAGAGAGAAGCCCTATGGTTGTTTTTCTAATTTTTCAGCCCATGGGTTGACCCTAGA
TGGCGTTTGGTGGCCGACGAGTGAACATTATTTCCAAGCTCAAAAATTTGTAGGCACTCCCCATGCGGACCAAATCCGTC
AGGTGAAATTGCCTAAGGATGCGGCTCGCCTAGGAAGACAGCGGACTCGGCCCCTACGGCCTGACTGGGAAGCCGTAAAA
GATGATGTCATGCGTCAAGCGGTGCTGTGTAAATTTGAGACCCATGCAGATATTCAAGACATTTTATTGTCAACGGGTAA
TCAAGACTTGGTTGAGAATGCTCCTGGAGATTATTACTGGGGCTGTGGTCAGAATGGCACAGGTAAAAATATGCTAGGGA
AAATTTTGATGGAAGTGCGAGAGAGATTGCGGGCGGGTTAG

Upstream 100 bases:

>100_bases
TTGAATGTAGAAAAATCTCAATATTTTCAGTTCTATACTTATTTATTTCAACCATCAGCCTGAGCCTCCAAGAAATAGAT
CAATTAGTTAGTAGAAAAAG

Downstream 100 bases:

>100_bases
CGCGATGGCGGCTTGAGGTGATGAAATTAATCCTGTTTGAAGATGCTGTAACGTTTTGCGATCGCACCCAACCTTACTTA
TTGCACTATCCAGCTGAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MAIYFYSSREKPYGCFSNFSAHGLTLDGVWWPTSEHYFQAQKFVGTPHADQIRQVKLPKDAARLGRQRTRPLRPDWEAVK
DDVMRQAVLCKFETHADIQDILLSTGNQDLVENAPGDYYWGCGQNGTGKNMLGKILMEVRERLRAG

Sequences:

>Translated_146_residues
MAIYFYSSREKPYGCFSNFSAHGLTLDGVWWPTSEHYFQAQKFVGTPHADQIRQVKLPKDAARLGRQRTRPLRPDWEAVK
DDVMRQAVLCKFETHADIQDILLSTGNQDLVENAPGDYYWGCGQNGTGKNMLGKILMEVRERLRAG
>Mature_145_residues
AIYFYSSREKPYGCFSNFSAHGLTLDGVWWPTSEHYFQAQKFVGTPHADQIRQVKLPKDAARLGRQRTRPLRPDWEAVKD
DVMRQAVLCKFETHADIQDILLSTGNQDLVENAPGDYYWGCGQNGTGKNMLGKILMEVRERLRAG

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=141, Percent_Identity=53.1914893617021, Blast_Score=156, Evalue=6e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 16680; Mature: 16549

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIYFYSSREKPYGCFSNFSAHGLTLDGVWWPTSEHYFQAQKFVGTPHADQIRQVKLPKD
CEEEEECCCCCCCCHHCCCCCCCEEECCEECCCCHHHHHHHHHCCCCCHHHHHHCCCCHH
AARLGRQRTRPLRPDWEAVKDDVMRQAVLCKFETHADIQDILLSTGNQDLVENAPGDYYW
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHCCCCCEEE
GCGQNGTGKNMLGKILMEVRERLRAG
CCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AIYFYSSREKPYGCFSNFSAHGLTLDGVWWPTSEHYFQAQKFVGTPHADQIRQVKLPKD
EEEEECCCCCCCCHHCCCCCCCEEECCEECCCCHHHHHHHHHCCCCCHHHHHHCCCCHH
AARLGRQRTRPLRPDWEAVKDDVMRQAVLCKFETHADIQDILLSTGNQDLVENAPGDYYW
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHCCCCCEEE
GCGQNGTGKNMLGKILMEVRERLRAG
CCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]