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The map label for this gene is cph2 [H]

Identifier: 158336843

GI number: 158336843

Start: 3768906

End: 3769577

Strand: Reverse

Name: cph2 [H]

Synonym: AM1_3711

Alternate gene names: 158336843

Gene position: 3769577-3768906 (Counterclockwise)

Preceding gene: 158336846

Following gene: 158336841

Centisome position: 57.96

GC content: 49.26

Gene sequence:

>672_bases
GTGTCTTTTCAACCTCCTTTTTACTCGAATGATTTGTCAAAACCAACAGATTCATTTGAACCGTTGCAGCAACCCAAGGC
TTTTGCGCTGACATCATTGCCCCTGAGATTATGGCAAACCCTTCAGCCCACCCGTCTCTATCGGCAAGTGAAGCAGCGAT
GGACTCGCAAAAGTGTGGTGCAAGTCTCACTTCGTTCTCATTTTGACACCCGACTAGATAGTATCTGGCAACGCTTGGAG
CAAGACCGACAGCCTTTATCTCTGTTTCTATGTGAAGTAGATGACTTTGACCGCTTGCGCCGACAATATGGTGACTCAGC
CTGCAATACCTATATTGGACAAGTGATTAAAGTCATTCAAGCCAATATTGAGCGCTCTACAGATATGCTGGCCCGCTATC
ATGGCGATACCTTCGCGGTCCTGCTCCCTCAAACCTCCATTGATGAAGCAGCCTGTATCGCCAAGAAAATTCGGCTCCGG
GTCAAAGCGCTCAAAGACAGTCCGACGTCTCCTTTACCAGACCAAGCCATTACCTTAAGTTTGGGGATTGCGACGATTGT
GCCAACCCCAAAGTTATCTCCAGTTAATTCCATCGCTGCCGCCGAACAATCTCTCCGCCAAGCCCAAAGAGCTGGCGGTA
ACCGCGTCATTCTCCAAGAAGGGGGCCGATAA

Upstream 100 bases:

>100_bases
AGATACTAGGTTCTCTTTGAAGAAAGATACCTGGTCACCTTTATCCAAATGATGAGGAAGTTGGCGATTCAGCTTCGATT
CAGCTCTATGGAGTACCAGA

Downstream 100 bases:

>100_bases
GGCCTCGTTGCTACACGCTTGCCTAAGCAGAGAGCAACCCAAAGATTACGAGCAATCCTCCAACCACTAGGGTCGAAATC
ATGCCATAGAAAGCATAAGT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSFQPPFYSNDLSKPTDSFEPLQQPKAFALTSLPLRLWQTLQPTRLYRQVKQRWTRKSVVQVSLRSHFDTRLDSIWQRLE
QDRQPLSLFLCEVDDFDRLRRQYGDSACNTYIGQVIKVIQANIERSTDMLARYHGDTFAVLLPQTSIDEAACIAKKIRLR
VKALKDSPTSPLPDQAITLSLGIATIVPTPKLSPVNSIAAAEQSLRQAQRAGGNRVILQEGGR

Sequences:

>Translated_223_residues
MSFQPPFYSNDLSKPTDSFEPLQQPKAFALTSLPLRLWQTLQPTRLYRQVKQRWTRKSVVQVSLRSHFDTRLDSIWQRLE
QDRQPLSLFLCEVDDFDRLRRQYGDSACNTYIGQVIKVIQANIERSTDMLARYHGDTFAVLLPQTSIDEAACIAKKIRLR
VKALKDSPTSPLPDQAITLSLGIATIVPTPKLSPVNSIAAAEQSLRQAQRAGGNRVILQEGGR
>Mature_222_residues
SFQPPFYSNDLSKPTDSFEPLQQPKAFALTSLPLRLWQTLQPTRLYRQVKQRWTRKSVVQVSLRSHFDTRLDSIWQRLEQ
DRQPLSLFLCEVDDFDRLRRQYGDSACNTYIGQVIKVIQANIERSTDMLARYHGDTFAVLLPQTSIDEAACIAKKIRLRV
KALKDSPTSPLPDQAITLSLGIATIVPTPKLSPVNSIAAAEQSLRQAQRAGGNRVILQEGGR

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=192, Percent_Identity=25, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 25264; Mature: 25133

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFQPPFYSNDLSKPTDSFEPLQQPKAFALTSLPLRLWQTLQPTRLYRQVKQRWTRKSVV
CCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QVSLRSHFDTRLDSIWQRLEQDRQPLSLFLCEVDDFDRLRRQYGDSACNTYIGQVIKVIQ
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHH
ANIERSTDMLARYHGDTFAVLLPQTSIDEAACIAKKIRLRVKALKDSPTSPLPDQAITLS
HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
LGIATIVPTPKLSPVNSIAAAEQSLRQAQRAGGNRVILQEGGR
ECHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC
>Mature Secondary Structure 
SFQPPFYSNDLSKPTDSFEPLQQPKAFALTSLPLRLWQTLQPTRLYRQVKQRWTRKSVV
CCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QVSLRSHFDTRLDSIWQRLEQDRQPLSLFLCEVDDFDRLRRQYGDSACNTYIGQVIKVIQ
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHH
ANIERSTDMLARYHGDTFAVLLPQTSIDEAACIAKKIRLRVKALKDSPTSPLPDQAITLS
HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
LGIATIVPTPKLSPVNSIAAAEQSLRQAQRAGGNRVILQEGGR
ECHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]