BacMap

Definition	Acaryochloris marina MBIC11017 chromosome, complete genome.
Accession	NC_009925
Length	6,503,724

Click here to switch to the map view.

The map label for this gene is vdlC [H]

Identifier: 158336808

GI number: 158336808

Start: 3730618

End: 3731499

Strand: Direct

Name: vdlC [H]

Synonym: AM1_3676

Alternate gene names: 158336808

Gene position: 3730618-3731499 (Clockwise)

Preceding gene: 158336803

Following gene: 158336812

Centisome position: 57.36

GC content: 52.15

Gene sequence:

>882_bases
ATGGTCGTCTTCCAACCTCACAACCCATCCTGCTCAGCGGCTAAAGTAGTGATGATTACGGGCTGTTCCTCGGGAATTGG
CAAAGCCCTCGCCCTAGAATTTCACCACCAGGGCTATCAGGTCTATGCCACTGCTCGAAACCTGGCTGATATGGAAGAAT
TGGCCCAACAAGGGATGGCTACATTGAAGTTAGATGTCACTTGCCCGGCAGAGATTGCCGCTGTCATTGATACCCTGGTG
GCAGAGACGCAGAGGCTCGATATTCTGGTGAATAATGCAGGCTATGCGGTAATGGGACCGTTACTGGATATTCCCCATGC
CGAGCTGGTGAACCAGTTTCAAACCAATGTATTTGCACCGATCCAACTGATTCAGCAGGTGGTGCCGTTGATGGGGGAGG
GAGGTCTAATCCTTAATTTGGGCAGTGTCTCAGGAATCATGAGTACGCCGTTTGCAGGGCCTTACTGTGCGTCTAAAGCG
GCCTTGCATGCGTTATCTGATGCATTGCGTATGGAACTGGCCCCTTTTAATATCCACGTGGTGACCATGCGAGCTGGTGC
TATTCAATCCCAATTTGGGCAAACAGCCTCCCAAAGGGCTGAACGGTTGCTCCCTTCCAATTCTCGATATCAGCACCTTG
CCCCTCACATCCAGGCGCGCGCCCGAGCGTCTCAGAACCAGGCCACGCCTGCTGCTACCTTGGCCCAACAGCTCGTGCAT
CGGATTCAGCAATCGGATCGACTCCCCCCTGAAATTGCTATTGGCCATAAAAGTCTTACCTTGCCACTGTTAAAACGATG
GCTACCGACTCGACTCTTGGATCGAATTTTGATGCGGAAATTTGGCCTAGGCGATTGGCAACCGGGTCCATTGCAGAAAT
AA

Upstream 100 bases:

>100_bases
GACTTGTATCACAGTCCATACCCAGATTGGCTTAACCTAAACGTACCCTCAATATTTTTTCAACTATTGAGGGGCAATGT
GAAATGGCTGCTTAAGTCTA

Downstream 100 bases:

>100_bases
GTCTTGCTCCGGTGCCAACTCGAAGAGCAGTGAGTCGTGAGCCAGCTAAAGCTCTAAGCGCATTTCGTTGGACGGTGTAA
AGCCAATCTGCTCATAGACG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MVVFQPHNPSCSAAKVVMITGCSSGIGKALALEFHHQGYQVYATARNLADMEELAQQGMATLKLDVTCPAEIAAVIDTLV
AETQRLDILVNNAGYAVMGPLLDIPHAELVNQFQTNVFAPIQLIQQVVPLMGEGGLILNLGSVSGIMSTPFAGPYCASKA
ALHALSDALRMELAPFNIHVVTMRAGAIQSQFGQTASQRAERLLPSNSRYQHLAPHIQARARASQNQATPAATLAQQLVH
RIQQSDRLPPEIAIGHKSLTLPLLKRWLPTRLLDRILMRKFGLGDWQPGPLQK

Sequences:

>Translated_293_residues
MVVFQPHNPSCSAAKVVMITGCSSGIGKALALEFHHQGYQVYATARNLADMEELAQQGMATLKLDVTCPAEIAAVIDTLV
AETQRLDILVNNAGYAVMGPLLDIPHAELVNQFQTNVFAPIQLIQQVVPLMGEGGLILNLGSVSGIMSTPFAGPYCASKA
ALHALSDALRMELAPFNIHVVTMRAGAIQSQFGQTASQRAERLLPSNSRYQHLAPHIQARARASQNQATPAATLAQQLVH
RIQQSDRLPPEIAIGHKSLTLPLLKRWLPTRLLDRILMRKFGLGDWQPGPLQK
>Mature_293_residues
MVVFQPHNPSCSAAKVVMITGCSSGIGKALALEFHHQGYQVYATARNLADMEELAQQGMATLKLDVTCPAEIAAVIDTLV
AETQRLDILVNNAGYAVMGPLLDIPHAELVNQFQTNVFAPIQLIQQVVPLMGEGGLILNLGSVSGIMSTPFAGPYCASKA
ALHALSDALRMELAPFNIHVVTMRAGAIQSQFGQTASQRAERLLPSNSRYQHLAPHIQARARASQNQATPAATLAQQLVH
RIQQSDRLPPEIAIGHKSLTLPLLKRWLPTRLLDRILMRKFGLGDWQPGPLQK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI223718074, Length=234, Percent_Identity=33.7606837606838, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI7657478, Length=193, Percent_Identity=34.7150259067358, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI20149619, Length=209, Percent_Identity=31.1004784688995, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI119392083, Length=199, Percent_Identity=30.1507537688442, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=31.4432989690722, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI150247226, Length=200, Percent_Identity=34.5, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI44680136, Length=188, Percent_Identity=27.6595744680851, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI44680133, Length=188, Percent_Identity=27.6595744680851, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI17738292, Length=188, Percent_Identity=27.6595744680851, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI22507405, Length=285, Percent_Identity=27.3684210526316, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI50726952, Length=182, Percent_Identity=33.5164835164835, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI32483357, Length=195, Percent_Identity=32.3076923076923, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7705925, Length=193, Percent_Identity=29.0155440414508, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI19743808, Length=212, Percent_Identity=31.6037735849057, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI40548397, Length=212, Percent_Identity=26.8867924528302, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI214010158, Length=212, Percent_Identity=26.8867924528302, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI214010156, Length=212, Percent_Identity=26.8867924528302, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI22758144, Length=212, Percent_Identity=26.8867924528302, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI109715829, Length=194, Percent_Identity=28.3505154639175, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI157739938, Length=193, Percent_Identity=30.0518134715026, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI126723191, Length=179, Percent_Identity=32.9608938547486, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI142976729, Length=184, Percent_Identity=28.804347826087, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI40254992, Length=183, Percent_Identity=29.5081967213115, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4503817, Length=177, Percent_Identity=27.683615819209, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1786701, Length=267, Percent_Identity=34.8314606741573, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI2367365, Length=183, Percent_Identity=36.0655737704918, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787335, Length=230, Percent_Identity=31.304347826087, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=32.5966850828729, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788459, Length=189, Percent_Identity=32.8042328042328, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786812, Length=187, Percent_Identity=34.2245989304813, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082100, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787905, Length=140, Percent_Identity=32.8571428571429, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790717, Length=187, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367175, Length=204, Percent_Identity=28.921568627451, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87082160, Length=174, Percent_Identity=27.5862068965517, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=186, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71997402, Length=186, Percent_Identity=34.4086021505376, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17557780, Length=203, Percent_Identity=29.5566502463054, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=196, Percent_Identity=32.6530612244898, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=199, Percent_Identity=32.1608040201005, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=205, Percent_Identity=35.1219512195122, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=196, Percent_Identity=31.6326530612245, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193210355, Length=195, Percent_Identity=29.7435897435897, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=200, Percent_Identity=30, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=167, Percent_Identity=32.3353293413174, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17507613, Length=290, Percent_Identity=26.2068965517241, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI32563809, Length=290, Percent_Identity=26.2068965517241, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=203, Percent_Identity=27.5862068965517, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=200, Percent_Identity=31, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=208, Percent_Identity=30.2884615384615, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=184, Percent_Identity=28.804347826087, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=199, Percent_Identity=27.1356783919598, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=198, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=210, Percent_Identity=32.3809523809524, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=204, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=207, Percent_Identity=28.9855072463768, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=186, Percent_Identity=30.1075268817204, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=199, Percent_Identity=27.1356783919598, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=219, Percent_Identity=29.2237442922374, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=28.4974093264249, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559962, Length=212, Percent_Identity=27.3584905660377, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=193, Percent_Identity=30.5699481865285, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=212, Percent_Identity=27.8301886792453, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=280, Percent_Identity=33.2142857142857, Blast_Score=131, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=36.5979381443299, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6319635, Length=241, Percent_Identity=27.3858921161826, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397609, Length=185, Percent_Identity=34.0540540540541, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI21357041, Length=186, Percent_Identity=30.6451612903226, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24651139, Length=216, Percent_Identity=31.0185185185185, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=30.9278350515464, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24580925, Length=199, Percent_Identity=30.1507537688442, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24643142, Length=186, Percent_Identity=31.7204301075269, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=31.7204301075269, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281364892, Length=175, Percent_Identity=30.8571428571429, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24584744, Length=190, Percent_Identity=32.6315789473684, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574402, Length=190, Percent_Identity=32.6315789473684, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24644339, Length=185, Percent_Identity=32.4324324324324, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24584752, Length=205, Percent_Identity=30.7317073170732, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI116007236, Length=196, Percent_Identity=27.0408163265306, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24639444, Length=187, Percent_Identity=28.8770053475936, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31782; Mature: 31782

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVFQPHNPSCSAAKVVMITGCSSGIGKALALEFHHQGYQVYATARNLADMEELAQQGMA
CEEECCCCCCCCCEEEEEEECCCCCCCHHEEEEEECCCEEEEEEHHHHHHHHHHHHCCCE
TLKLDVTCPAEIAAVIDTLVAETQRLDILVNNAGYAVMGPLLDIPHAELVNQFQTNVFAP
EEEEEECCHHHHHHHHHHHHHHHHHEEEEECCCCCEEECHHHCCCHHHHHHHHHHCCHHH
IQLIQQVVPLMGEGGLILNLGSVSGIMSTPFAGPYCASKAALHALSDALRMELAPFNIHV
HHHHHHHHHHCCCCCEEEEECCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCEEEE
VTMRAGAIQSQFGQTASQRAERLLPSNSRYQHLAPHIQARARASQNQATPAATLAQQLVH
EEEECHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
RIQQSDRLPPEIAIGHKSLTLPLLKRWLPTRLLDRILMRKFGLGDWQPGPLQK
HHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MVVFQPHNPSCSAAKVVMITGCSSGIGKALALEFHHQGYQVYATARNLADMEELAQQGMA
CEEECCCCCCCCCEEEEEEECCCCCCCHHEEEEEECCCEEEEEEHHHHHHHHHHHHCCCE
TLKLDVTCPAEIAAVIDTLVAETQRLDILVNNAGYAVMGPLLDIPHAELVNQFQTNVFAP
EEEEEECCHHHHHHHHHHHHHHHHHEEEEECCCCCEEECHHHCCCHHHHHHHHHHCCHHH
IQLIQQVVPLMGEGGLILNLGSVSGIMSTPFAGPYCASKAALHALSDALRMELAPFNIHV
HHHHHHHHHHCCCCCEEEEECCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCEEEE
VTMRAGAIQSQFGQTASQRAERLLPSNSRYQHLAPHIQARARASQNQATPAATLAQQLVH
EEEECHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
RIQQSDRLPPEIAIGHKSLTLPLLKRWLPTRLLDRILMRKFGLGDWQPGPLQK
HHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]