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The map label for this gene is hli [H]

Identifier: 158336786

GI number: 158336786

Start: 3710290

End: 3711348

Strand: Direct

Name: hli [H]

Synonym: AM1_3654

Alternate gene names: 158336786

Gene position: 3710290-3711348 (Clockwise)

Preceding gene: 158336783

Following gene: 158336787

Centisome position: 57.05

GC content: 43.91

Gene sequence:

>1059_bases
ATGCAAACTTATGGAAATCAAAACGTTGAATACGGATGGTGGTCGGGAAACTCCCGGTTCACTGATTTTAGCGCGCAATT
TTTAGCCGCTCATATCGGCCAAATTGCTTCAATGACATTTTTTGCTGGATCGATCACTTTATTTGAACTCTCTCGATATA
ACCCTGATATTCCCTTATATGCTCAAGGATTTGTCTGTTTACCGCAGCTGTCAAGAGTTGGTTTTGGGGTTGGAGCAGGT
GGAGCGGTTGTGGATACTTACCCCTTCTTCGCTGTTGGCATGATTCATTTATTCGCAGCAGCTGTATTTGGTTCGGGTGC
AATTTTTCATATTTTAACGGGTCCTAAAGTTTTAGCAGACAGTGACTCTGCTGCCTCCCAAAGATTCCACTTTGAGTGGG
ACGATTTTGAAACACAAGGTCGGATTTTGGGCCATCATTTATTATTCTTAGGCTCTGGTGCACTTCTATTTGTCGTCTGG
GCTGCTACCCACGGAATTTATGATCCAAACGTTGGTGAAGTCCGAGCAGTATCTCCTGGCTTTGATATTGTTCGAATCTT
TAAATATGGCTGGGCTACACCTGGTTTTAACCCCTTCTTTGTCGATAATCTAGAAGATGTGATGGGAGGGCACCTCTTTA
TTGCTCTGATCGATATTGCTGGCGGTATCTATCATATTCTTGTTAAGCCTTGGCCTTACACAGAAAGAATTTTCACAAAG
TCTGGTGAAGCTCTTTTGGGTTATGCACTAGGTGGCCTAGGACTCATGGGTCTCGTAGCAGCCTATTTCTGCTCTGTTAA
CGACGTTGTTTTCCCTGTTGAGTTTTTTGGTCCGGTGCTTCAGCCTAACTTAGGTTTCTTACCTAACTTTGCAGATACCT
TAGATGTTTCTGCCAGTGGTCATACTAGCCGTTTCTGGATTGCTAATTTCCACTATTTCTGGGGATTCTATTGCATCCAA
GGTCACCTGTTCCATGCCTTGCGTGCCTCAGGTTTTGACTTCCGTGTGCTTACCAAGTTCTTTACAACTGAAACCGTTGA
GCTTGGCGCTGACATTTAA

Upstream 100 bases:

>100_bases
AATTAACATTACTTAGCGGGCGAGGTCTGATAGTATTTTGTATTAAGTTTGATAATAAAGTTACGGTGGCACCGATAACA
GAGGAGGAGATAGCTTAACA

Downstream 100 bases:

>100_bases
GTCAGACTATATTTTCGCAAAAGTTTGAAAGCGCTTCTGCTGCAGTCGCGCTTTTAGACTTTTGTAAAACGAAAATATGA
AGGCAGTGAAACTTAAACTC

Product: high light inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MQTYGNQNVEYGWWSGNSRFTDFSAQFLAAHIGQIASMTFFAGSITLFELSRYNPDIPLYAQGFVCLPQLSRVGFGVGAG
GAVVDTYPFFAVGMIHLFAAAVFGSGAIFHILTGPKVLADSDSAASQRFHFEWDDFETQGRILGHHLLFLGSGALLFVVW
AATHGIYDPNVGEVRAVSPGFDIVRIFKYGWATPGFNPFFVDNLEDVMGGHLFIALIDIAGGIYHILVKPWPYTERIFTK
SGEALLGYALGGLGLMGLVAAYFCSVNDVVFPVEFFGPVLQPNLGFLPNFADTLDVSASGHTSRFWIANFHYFWGFYCIQ
GHLFHALRASGFDFRVLTKFFTTETVELGADI

Sequences:

>Translated_352_residues
MQTYGNQNVEYGWWSGNSRFTDFSAQFLAAHIGQIASMTFFAGSITLFELSRYNPDIPLYAQGFVCLPQLSRVGFGVGAG
GAVVDTYPFFAVGMIHLFAAAVFGSGAIFHILTGPKVLADSDSAASQRFHFEWDDFETQGRILGHHLLFLGSGALLFVVW
AATHGIYDPNVGEVRAVSPGFDIVRIFKYGWATPGFNPFFVDNLEDVMGGHLFIALIDIAGGIYHILVKPWPYTERIFTK
SGEALLGYALGGLGLMGLVAAYFCSVNDVVFPVEFFGPVLQPNLGFLPNFADTLDVSASGHTSRFWIANFHYFWGFYCIQ
GHLFHALRASGFDFRVLTKFFTTETVELGADI
>Mature_352_residues
MQTYGNQNVEYGWWSGNSRFTDFSAQFLAAHIGQIASMTFFAGSITLFELSRYNPDIPLYAQGFVCLPQLSRVGFGVGAG
GAVVDTYPFFAVGMIHLFAAAVFGSGAIFHILTGPKVLADSDSAASQRFHFEWDDFETQGRILGHHLLFLGSGALLFVVW
AATHGIYDPNVGEVRAVSPGFDIVRIFKYGWATPGFNPFFVDNLEDVMGGHLFIALIDIAGGIYHILVKPWPYTERIFTK
SGEALLGYALGGLGLMGLVAAYFCSVNDVVFPVEFFGPVLQPNLGFLPNFADTLDVSASGHTSRFWIANFHYFWGFYCIQ
GHLFHALRASGFDFRVLTKFFTTETVELGADI

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 38726; Mature: 38726

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYGNQNVEYGWWSGNSRFTDFSAQFLAAHIGQIASMTFFAGSITLFELSRYNPDIPLY
CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCEE
AQGFVCLPQLSRVGFGVGAGGAVVDTYPFFAVGMIHLFAAAVFGSGAIFHILTGPKVLAD
ECCEEEECHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEC
SDSAASQRFHFEWDDFETQGRILGHHLLFLGSGALLFVVWAATHGIYDPNVGEVRAVSPG
CCCHHCCEEEEECCCCCCCCHHHHHEEEECCCCHHHEEEEHHHCCCCCCCCCCEEEECCC
FDIVRIFKYGWATPGFNPFFVDNLEDVMGGHLFIALIDIAGGIYHILVKPWPYTERIFTK
CHHHHHHHHCCCCCCCCCEEECCHHHHHCCHHEEHHHHHHCCEEEEEECCCCCHHHHHCC
SGEALLGYALGGLGLMGLVAAYFCSVNDVVFPVEFFGPVLQPNLGFLPNFADTLDVSASG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCHHHCCCCCCCCCCCHHEECCCCC
HTSRFWIANFHYFWGFYCIQGHLFHALRASGFDFRVLTKFFTTETVELGADI
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQTYGNQNVEYGWWSGNSRFTDFSAQFLAAHIGQIASMTFFAGSITLFELSRYNPDIPLY
CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCEE
AQGFVCLPQLSRVGFGVGAGGAVVDTYPFFAVGMIHLFAAAVFGSGAIFHILTGPKVLAD
ECCEEEECHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEC
SDSAASQRFHFEWDDFETQGRILGHHLLFLGSGALLFVVWAATHGIYDPNVGEVRAVSPG
CCCHHCCEEEEECCCCCCCCHHHHHEEEECCCCHHHEEEEHHHCCCCCCCCCCEEEECCC
FDIVRIFKYGWATPGFNPFFVDNLEDVMGGHLFIALIDIAGGIYHILVKPWPYTERIFTK
CHHHHHHHHCCCCCCCCCEEECCHHHHHCCHHEEHHHHHHCCEEEEEECCCCCHHHHHCC
SGEALLGYALGGLGLMGLVAAYFCSVNDVVFPVEFFGPVLQPNLGFLPNFADTLDVSASG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCHHHCCCCCCCCCCCHHEECCCCC
HTSRFWIANFHYFWGFYCIQGHLFHALRASGFDFRVLTKFFTTETVELGADI
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8986795; 9526503 [H]