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The map label for this gene is degT [H]

Identifier: 158336754

GI number: 158336754

Start: 3678682

End: 3679836

Strand: Reverse

Name: degT [H]

Synonym: AM1_3622

Alternate gene names: 158336754

Gene position: 3679836-3678682 (Counterclockwise)

Preceding gene: 158336755

Following gene: 158336753

Centisome position: 56.58

GC content: 44.68

Gene sequence:

>1155_bases
ATGAAAATTCCGATTCTTGATCTCAAACCCCAATATGCCAGCATCAAAACCGACATCCATACTGCTCTTGATCGGGTCCT
GGAATCTGGCGCTTTCATTATGGGACCGGAAGTCAAACAGTTTGAGCAAGAAGTGGCCGCTTACCTCGGGGTCCAACATG
CAATTGGTGTCAACTCAGGCACCGATGCTTTAGTCATTGGCCTTAAAGCATCTGGGATAGGGCCAGAAGATGAGGTCATT
ACGACTCCCTTCTCGTTTTTTGCTACAGCAGAATCGATCAGTAATGTAGGGGCCAAACCGATATTTGTGGATATTGATCC
CCAAACATTTAACCTAAATGCTGATCACATTGAAGCTCAAATTACCCCAAAGACTAAGGCCATTTTACCCGTACATTTAT
ATGGTCATCCAGCGGCTATGGCGACCATTATAAAAGTTGCCCAAAAATATAATCTAAAAGTGATTGAGGATTGTGCCCAG
GCATTTGGAGCACACTATAGGAGTGATGAAGACAACAATGAGTCAGCCAACGACCCATTAAAAGTTGGCCACCTCCGCGA
TCAAGCAGTAGGAACGATAGGAGATGTTGGGGCCTTTTCATTTTTCCCATCTAAGAATTTAGGGGCTTATGGTGACGGAG
GTCTCATCACCACAAATGACGATGCCATTGCAGAGACCGCTAAGATGCTCCGCGTCCATGGGGCGTTGAAGAAGTATCAC
AATGAGGTATTAGGATATAACTCTCGTCTTGATGCTATTCAAGCGGCTATTTTGAGGGTCAAATTGCAGCATATCGACGG
TTGGAATAGAGGACGTCGCCAAGTTGCCCAAAGTTACAATGACGGTTTAGCAAATTTACCTGGGATTGTGACACCACAGG
TTGTTAAAGGACATGTATTCCACCAATATACAGTTCGCGTCTTAGATGGGAAGCGTGATGCGCTCAAGCAGTATCTAGCA
GACCATGATATAGGGTCGATGATCTATTACCCCGTCCCTCAAGATCAGCTACCTGTTTATCTGGGCCAGTACGATACGCT
GGAAGTGAGTAGTCAATATACCCAAGAAGTCTTAAGTCTACCGATTTGGCCAGAGCTTCAGCCTGATACTCAAAACATCA
TCATAAAAACTATCCAAAAATTCTACTTTGGGTAA

Upstream 100 bases:

>100_bases
TATTTTAGAATTCGACAACACTGGCTATGCTGTAGACTCAGCAGGTAACCAATATCAAAAAGTCACTGAAATAGAAGTCC
GCAAACTTTAGTACCCAGGC

Downstream 100 bases:

>100_bases
GTCATCAAAAACCAGGCGAGAATTTTGCTGAAGCGTAGTCAGAAACTCACGAACATACCCTTCTTCCGTAATGTCTTCAC
ATTGATGACAGGCACTGCTT

Product: DegT/DnrJ/EryC1/StrS aminotransferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKIPILDLKPQYASIKTDIHTALDRVLESGAFIMGPEVKQFEQEVAAYLGVQHAIGVNSGTDALVIGLKASGIGPEDEVI
TTPFSFFATAESISNVGAKPIFVDIDPQTFNLNADHIEAQITPKTKAILPVHLYGHPAAMATIIKVAQKYNLKVIEDCAQ
AFGAHYRSDEDNNESANDPLKVGHLRDQAVGTIGDVGAFSFFPSKNLGAYGDGGLITTNDDAIAETAKMLRVHGALKKYH
NEVLGYNSRLDAIQAAILRVKLQHIDGWNRGRRQVAQSYNDGLANLPGIVTPQVVKGHVFHQYTVRVLDGKRDALKQYLA
DHDIGSMIYYPVPQDQLPVYLGQYDTLEVSSQYTQEVLSLPIWPELQPDTQNIIIKTIQKFYFG

Sequences:

>Translated_384_residues
MKIPILDLKPQYASIKTDIHTALDRVLESGAFIMGPEVKQFEQEVAAYLGVQHAIGVNSGTDALVIGLKASGIGPEDEVI
TTPFSFFATAESISNVGAKPIFVDIDPQTFNLNADHIEAQITPKTKAILPVHLYGHPAAMATIIKVAQKYNLKVIEDCAQ
AFGAHYRSDEDNNESANDPLKVGHLRDQAVGTIGDVGAFSFFPSKNLGAYGDGGLITTNDDAIAETAKMLRVHGALKKYH
NEVLGYNSRLDAIQAAILRVKLQHIDGWNRGRRQVAQSYNDGLANLPGIVTPQVVKGHVFHQYTVRVLDGKRDALKQYLA
DHDIGSMIYYPVPQDQLPVYLGQYDTLEVSSQYTQEVLSLPIWPELQPDTQNIIIKTIQKFYFG
>Mature_384_residues
MKIPILDLKPQYASIKTDIHTALDRVLESGAFIMGPEVKQFEQEVAAYLGVQHAIGVNSGTDALVIGLKASGIGPEDEVI
TTPFSFFATAESISNVGAKPIFVDIDPQTFNLNADHIEAQITPKTKAILPVHLYGHPAAMATIIKVAQKYNLKVIEDCAQ
AFGAHYRSDEDNNESANDPLKVGHLRDQAVGTIGDVGAFSFFPSKNLGAYGDGGLITTNDDAIAETAKMLRVHGALKKYH
NEVLGYNSRLDAIQAAILRVKLQHIDGWNRGRRQVAQSYNDGLANLPGIVTPQVVKGHVFHQYTVRVLDGKRDALKQYLA
DHDIGSMIYYPVPQDQLPVYLGQYDTLEVSSQYTQEVLSLPIWPELQPDTQNIIIKTIQKFYFG

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=380, Percent_Identity=32.6315789473684, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI2367285, Length=368, Percent_Identity=30.4347826086957, Blast_Score=155, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42211; Mature: 42211

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIPILDLKPQYASIKTDIHTALDRVLESGAFIMGPEVKQFEQEVAAYLGVQHAIGVNSG
CCCCEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCC
TDALVIGLKASGIGPEDEVITTPFSFFATAESISNVGAKPIFVDIDPQTFNLNADHIEAQ
CCEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCEEEEECCCEEECCHHHEEEE
ITPKTKAILPVHLYGHPAAMATIIKVAQKYNLKVIEDCAQAFGAHYRSDEDNNESANDPL
ECCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCE
KVGHLRDQAVGTIGDVGAFSFFPSKNLGAYGDGGLITTNDDAIAETAKMLRVHGALKKYH
EECCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
NEVLGYNSRLDAIQAAILRVKLQHIDGWNRGRRQVAQSYNDGLANLPGIVTPQVVKGHVF
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHCCCCCCCCHHHHCEEE
HQYTVRVLDGKRDALKQYLADHDIGSMIYYPVPQDQLPVYLGQYDTLEVSSQYTQEVLSL
EEEEEEEECCCHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCEEEHHHHHHHHHHCC
PIWPELQPDTQNIIIKTIQKFYFG
CCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIPILDLKPQYASIKTDIHTALDRVLESGAFIMGPEVKQFEQEVAAYLGVQHAIGVNSG
CCCCEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCC
TDALVIGLKASGIGPEDEVITTPFSFFATAESISNVGAKPIFVDIDPQTFNLNADHIEAQ
CCEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCEEEEECCCEEECCHHHEEEE
ITPKTKAILPVHLYGHPAAMATIIKVAQKYNLKVIEDCAQAFGAHYRSDEDNNESANDPL
ECCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCE
KVGHLRDQAVGTIGDVGAFSFFPSKNLGAYGDGGLITTNDDAIAETAKMLRVHGALKKYH
EECCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
NEVLGYNSRLDAIQAAILRVKLQHIDGWNRGRRQVAQSYNDGLANLPGIVTPQVVKGHVF
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHCCCCCCCCHHHHCEEE
HQYTVRVLDGKRDALKQYLADHDIGSMIYYPVPQDQLPVYLGQYDTLEVSSQYTQEVLSL
EEEEEEEECCCHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCEEEHHHHHHHHHHCC
PIWPELQPDTQNIIIKTIQKFYFG
CCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]