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The map label for this gene is ycfH [C]

Identifier: 158336723

GI number: 158336723

Start: 3640347

End: 3641141

Strand: Direct

Name: ycfH [C]

Synonym: AM1_3591

Alternate gene names: 158336723

Gene position: 3640347-3641141 (Clockwise)

Preceding gene: 158336722

Following gene: 158336724

Centisome position: 55.97

GC content: 47.67

Gene sequence:

>795_bases
ATGCAACTCATAGACACTCATGTTCATTTGAACTTTGATGTTTTTCAGCCTGATCTCGACCAGATAGCTCAGCGTTGGCG
TGATCATCACATTGTGAGGTTAGTCCATTCTTGCGTTGAGCCATCGGAGTTTGAACAAATCCAAAGCCTGTCCCAGCGAT
TTTCTGAACTCTATTATGCAGTAGGTGTCCATCCTCTAGATGTCGATAAATGGACTGCAGAAGCAGAAGCTCAGATACGC
TCGATGGCTACATCTGATTCTAAAGTGGTGGCCATCGGTGAAACCGGTTTAGATTTCTTCAAAGCCAATAACTGCGATCA
TCAAGAGCAAGTCTTTTGGACCCATCTCCAGATGGCTCAGCAACTGCAGCTCCCAGTGATTATTCACTGCCGAGAAGCGG
CAACCACAATGGTGGAGTTGCTCGAAAAATTTTGGGAAATGCACGGGCCCGTGAAGGGAGTGATGCATTGCTGGAGCGGC
ACCCCGGAAGAGACGCAACAGTTCCTAGCGTTGGGATTCTATGTCAGTTTTAGCGGTATCGTCACCTTCAAAAATGCGAC
CCAAGTTCATGAGTCCGCCCGTCTTGTGCCTTGCGATCGCATTCTCGTAGAAACAGATTGTCCTTTTCTGGCGCCTGTTC
CTGTGCGAGGTAAACGTCGTAATGAACCTGCAAACGTAAGATATGTCGCCCAGCAGGTGGCGGATTTGCGAGGCGTCTCT
TTAGAAGAATTAGCAGCTACAACGACTCAAAATGCCTGTCGATTATTCCAGTTGTCTTTACCCGTTCAATCTTAA

Upstream 100 bases:

>100_bases
AAAGCAGCGACTTGAGGTTGGGCACCGTTTTTCCTGAAATCTAGATATAGCTGATTTTTACTCTAGATTCTGTCTCCACC
GCTTTGGACATTGCTTCTTC

Downstream 100 bases:

>100_bases
AAAAGATTGATTTTCGATACAAACGTACCCTAAAATTGTTGATTCTATTCGCGCTGGGCGTGATTATCAGAGGAGCTGTA
TGACTAACTCGATCTACACT

Product: TatD-like deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MQLIDTHVHLNFDVFQPDLDQIAQRWRDHHIVRLVHSCVEPSEFEQIQSLSQRFSELYYAVGVHPLDVDKWTAEAEAQIR
SMATSDSKVVAIGETGLDFFKANNCDHQEQVFWTHLQMAQQLQLPVIIHCREAATTMVELLEKFWEMHGPVKGVMHCWSG
TPEETQQFLALGFYVSFSGIVTFKNATQVHESARLVPCDRILVETDCPFLAPVPVRGKRRNEPANVRYVAQQVADLRGVS
LEELAATTTQNACRLFQLSLPVQS

Sequences:

>Translated_264_residues
MQLIDTHVHLNFDVFQPDLDQIAQRWRDHHIVRLVHSCVEPSEFEQIQSLSQRFSELYYAVGVHPLDVDKWTAEAEAQIR
SMATSDSKVVAIGETGLDFFKANNCDHQEQVFWTHLQMAQQLQLPVIIHCREAATTMVELLEKFWEMHGPVKGVMHCWSG
TPEETQQFLALGFYVSFSGIVTFKNATQVHESARLVPCDRILVETDCPFLAPVPVRGKRRNEPANVRYVAQQVADLRGVS
LEELAATTTQNACRLFQLSLPVQS
>Mature_264_residues
MQLIDTHVHLNFDVFQPDLDQIAQRWRDHHIVRLVHSCVEPSEFEQIQSLSQRFSELYYAVGVHPLDVDKWTAEAEAQIR
SMATSDSKVVAIGETGLDFFKANNCDHQEQVFWTHLQMAQQLQLPVIIHCREAATTMVELLEKFWEMHGPVKGVMHCWSG
TPEETQQFLALGFYVSFSGIVTFKNATQVHESARLVPCDRILVETDCPFLAPVPVRGKRRNEPANVRYVAQQVADLRGVS
LEELAATTTQNACRLFQLSLPVQS

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=29.9625468164794, Blast_Score=117, Evalue=8e-27,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=29.2134831460674, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=30.1470588235294, Blast_Score=114, Evalue=6e-26,
Organism=Homo sapiens, GI226061614, Length=260, Percent_Identity=30, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI225903424, Length=276, Percent_Identity=26.8115942028986, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI14042943, Length=269, Percent_Identity=23.4200743494424, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=28.0701754385965, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI225903439, Length=235, Percent_Identity=25.1063829787234, Blast_Score=83, Evalue=2e-16,
Organism=Escherichia coli, GI1787342, Length=264, Percent_Identity=38.6363636363636, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI48994985, Length=263, Percent_Identity=34.6007604562738, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI87082439, Length=261, Percent_Identity=27.2030651340996, Blast_Score=115, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=27.8169014084507, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=268, Percent_Identity=27.9850746268657, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17565396, Length=224, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17543026, Length=185, Percent_Identity=29.1891891891892, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=31.1418685121107, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI221330018, Length=303, Percent_Identity=29.042904290429, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24586117, Length=278, Percent_Identity=29.4964028776978, Blast_Score=104, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30044; Mature: 30044

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLIDTHVHLNFDVFQPDLDQIAQRWRDHHIVRLVHSCVEPSEFEQIQSLSQRFSELYYA
CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VGVHPLDVDKWTAEAEAQIRSMATSDSKVVAIGETGLDFFKANNCDHQEQVFWTHLQMAQ
HCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHH
QLQLPVIIHCREAATTMVELLEKFWEMHGPVKGVMHCWSGTPEETQQFLALGFYVSFSGI
HCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHEEECCE
VTFKNATQVHESARLVPCDRILVETDCPFLAPVPVRGKRRNEPANVRYVAQQVADLRGVS
EEECCHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
LEELAATTTQNACRLFQLSLPVQS
HHHHHHHHHHHHHEEEEEECCCCC
>Mature Secondary Structure
MQLIDTHVHLNFDVFQPDLDQIAQRWRDHHIVRLVHSCVEPSEFEQIQSLSQRFSELYYA
CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VGVHPLDVDKWTAEAEAQIRSMATSDSKVVAIGETGLDFFKANNCDHQEQVFWTHLQMAQ
HCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHH
QLQLPVIIHCREAATTMVELLEKFWEMHGPVKGVMHCWSGTPEETQQFLALGFYVSFSGI
HCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHEEECCE
VTFKNATQVHESARLVPCDRILVETDCPFLAPVPVRGKRRNEPANVRYVAQQVADLRGVS
EEECCHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
LEELAATTTQNACRLFQLSLPVQS
HHHHHHHHHHHHHEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]