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The map label for this gene is ycbY [C]

Identifier: 158336702

GI number: 158336702

Start: 3618898

End: 3620025

Strand: Reverse

Name: ycbY [C]

Synonym: AM1_3570

Alternate gene names: 158336702

Gene position: 3620025-3618898 (Counterclockwise)

Preceding gene: 158336704

Following gene: 158336696

Centisome position: 55.66

GC content: 51.68

Gene sequence:

>1128_bases
ATGCCCAGACAATATTTTGCCACCGTTGCCCGAGGACTAGAATCTTTAGCCGCCCAAGAACTGACAGAATTAGGGGCGCA
ATCCGTTGAGCCTGGATTTTGTGGAGTGGCTTTTCAGGGAGATCGCCCATTGCTATACCAGGTGAATCTCTGGGCCAGAC
TGCCATTTCGGATTCTGCTGCGATTAGAAGCGTTTCCTTGCCAAGATGCCGAGGCTCTTTATCAGGGCATTCAAACCTTG
CCTTGGCAGGAGTATTTGACCCCAGACTATACCTTCGCCGTTGATGCCACGGGGAAGACACCTCAGCTGAACCATAGTCA
CTTCACGGCTCTGCAGGTTAAAAATGCCATTGTTGATCAACAGCGCCAACAATTCGGAACGCGATCGCACATCGATACCC
AAACTCCAGACGTGCGGATCAACGTTCACCTCCATCAAGCTCGCTGTGTGGTTAACCTGGATAGTTCCGGCAGCAGCCTC
CATCGACGGGGCTATCGTCCGGCGGTAGGGGCTGCTCCCTTAAAAGAATCCTTGGCTGCTGCTCTGATTCGCTTATCGGG
CTGGCAATCCGATTTAGCATTTATGGATCCCCTCTGTGGCTCCGGCACCCTACCGTTGGAAGCCTGCTTACAGGGTCTCA
GAATTGCACCGGGTACTTTTCGACAAGGCTTTGGCTTTCAAACCTGGCCAGATTTTGATGCGGCTCTATGGCAATCTCTG
CAAACTAAAGCGAGAGAGCAACAACGCTCACACCTTCCCATGCCCATTTGGGGCAGTGACCAAAATGCCGAGGTGATTGA
CCAAGCCCAGCTCAATGCCCAGAATTGCCATGTCGCAGACTATATCTGGTTTGAAGCTATCGACTTACAGGATGTTGAAC
CGCCCACCGATAGCGGCATCCTCATCTGCAACCCGCCCTATGGCGAGCGCTTAGGGAATCCTCGGGAACTGGGGGATTTC
TATCGTCAATTGGGTCAAATCCTCAAACAGCGCTTCAAAGGCTGGACCGCCTTTGTTTTAAGTGGGAATAAAGCCTTATC
TCAATCGATTGGCCTCAAATCTTGTCAGCGCAAGGCGATCAACAATGGCTCCATTGCCTGTCAGTTCTTGAAGTATGAGC
TGTATTAG

Upstream 100 bases:

>100_bases
AAGTCACGGCATCCATCCAGTTAGGGAATCAAAATGCTTCAATAAGCAAAGCGATGTCGTGGCTGGGGATTCTCCCACCC
ACTCTCATGAGGTCCCTGTC

Downstream 100 bases:

>100_bases
GTGGTTTACACAGAATCGACGATGAGTTGTTCGCTTTCTATCGTTGACAATGTTTGATCGACACACACACGATTTCTGCC
TTCGGCCTTGGCTTTGTATA

Product: RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPRQYFATVARGLESLAAQELTELGAQSVEPGFCGVAFQGDRPLLYQVNLWARLPFRILLRLEAFPCQDAEALYQGIQTL
PWQEYLTPDYTFAVDATGKTPQLNHSHFTALQVKNAIVDQQRQQFGTRSHIDTQTPDVRINVHLHQARCVVNLDSSGSSL
HRRGYRPAVGAAPLKESLAAALIRLSGWQSDLAFMDPLCGSGTLPLEACLQGLRIAPGTFRQGFGFQTWPDFDAALWQSL
QTKAREQQRSHLPMPIWGSDQNAEVIDQAQLNAQNCHVADYIWFEAIDLQDVEPPTDSGILICNPPYGERLGNPRELGDF
YRQLGQILKQRFKGWTAFVLSGNKALSQSIGLKSCQRKAINNGSIACQFLKYELY

Sequences:

>Translated_375_residues
MPRQYFATVARGLESLAAQELTELGAQSVEPGFCGVAFQGDRPLLYQVNLWARLPFRILLRLEAFPCQDAEALYQGIQTL
PWQEYLTPDYTFAVDATGKTPQLNHSHFTALQVKNAIVDQQRQQFGTRSHIDTQTPDVRINVHLHQARCVVNLDSSGSSL
HRRGYRPAVGAAPLKESLAAALIRLSGWQSDLAFMDPLCGSGTLPLEACLQGLRIAPGTFRQGFGFQTWPDFDAALWQSL
QTKAREQQRSHLPMPIWGSDQNAEVIDQAQLNAQNCHVADYIWFEAIDLQDVEPPTDSGILICNPPYGERLGNPRELGDF
YRQLGQILKQRFKGWTAFVLSGNKALSQSIGLKSCQRKAINNGSIACQFLKYELY
>Mature_374_residues
PRQYFATVARGLESLAAQELTELGAQSVEPGFCGVAFQGDRPLLYQVNLWARLPFRILLRLEAFPCQDAEALYQGIQTLP
WQEYLTPDYTFAVDATGKTPQLNHSHFTALQVKNAIVDQQRQQFGTRSHIDTQTPDVRINVHLHQARCVVNLDSSGSSLH
RRGYRPAVGAAPLKESLAAALIRLSGWQSDLAFMDPLCGSGTLPLEACLQGLRIAPGTFRQGFGFQTWPDFDAALWQSLQ
TKAREQQRSHLPMPIWGSDQNAEVIDQAQLNAQNCHVADYIWFEAIDLQDVEPPTDSGILICNPPYGERLGNPRELGDFY
RQLGQILKQRFKGWTAFVLSGNKALSQSIGLKSCQRKAINNGSIACQFLKYELY

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=375, Percent_Identity=37.8666666666667, Blast_Score=243, Evalue=1e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 41923; Mature: 41792

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRQYFATVARGLESLAAQELTELGAQSVEPGFCGVAFQGDRPLLYQVNLWARLPFRILL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECHHHHCHHHHHH
RLEAFPCQDAEALYQGIQTLPWQEYLTPDYTFAVDATGKTPQLNHSHFTALQVKNAIVDQ
HHHCCCCCCHHHHHHHHHCCCHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
QRQQFGTRSHIDTQTPDVRINVHLHQARCVVNLDSSGSSLHRRGYRPAVGAAPLKESLAA
HHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCHHHHCCCCCCCCCCHHHHHHHH
ALIRLSGWQSDLAFMDPLCGSGTLPLEACLQGLRIAPGTFRQGFGFQTWPDFDAALWQSL
HHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCCCHHHHHHHHH
QTKAREQQRSHLPMPIWGSDQNAEVIDQAQLNAQNCHVADYIWFEAIDLQDVEPPTDSGI
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEHHHEEEEECCCCCCCCCCCCE
LICNPPYGERLGNPRELGDFYRQLGQILKQRFKGWTAFVLSGNKALSQSIGLKSCQRKAI
EEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHCCHHHHHHHHC
NNGSIACQFLKYELY
CCCCEEEEEEEEECC
>Mature Secondary Structure 
PRQYFATVARGLESLAAQELTELGAQSVEPGFCGVAFQGDRPLLYQVNLWARLPFRILL
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECHHHHCHHHHHH
RLEAFPCQDAEALYQGIQTLPWQEYLTPDYTFAVDATGKTPQLNHSHFTALQVKNAIVDQ
HHHCCCCCCHHHHHHHHHCCCHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
QRQQFGTRSHIDTQTPDVRINVHLHQARCVVNLDSSGSSLHRRGYRPAVGAAPLKESLAA
HHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCHHHHCCCCCCCCCCHHHHHHHH
ALIRLSGWQSDLAFMDPLCGSGTLPLEACLQGLRIAPGTFRQGFGFQTWPDFDAALWQSL
HHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCCCHHHHHHHHH
QTKAREQQRSHLPMPIWGSDQNAEVIDQAQLNAQNCHVADYIWFEAIDLQDVEPPTDSGI
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEHHHEEEEECCCCCCCCCCCCE
LICNPPYGERLGNPRELGDFYRQLGQILKQRFKGWTAFVLSGNKALSQSIGLKSCQRKAI
EEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHCCHHHHHHHHC
NNGSIACQFLKYELY
CCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]