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The map label for this gene is hupR1 [H]

Identifier: 158336698

GI number: 158336698

Start: 3614832

End: 3615227

Strand: Direct

Name: hupR1 [H]

Synonym: AM1_3566

Alternate gene names: 158336698

Gene position: 3614832-3615227 (Clockwise)

Preceding gene: 158336697

Following gene: 158336699

Centisome position: 55.58

GC content: 43.69

Gene sequence:

>396_bases
ATGACTAAACTGGCTATTCTTTGTGTTGACGATGAAGTCATTATTCTCAACAGTCTCCTACGACAGCTGCAAACTGCTTT
TGACGATCACTACATCTATGAAACGGCTGAAAATGCCAGCGAAGCCTTGGAGCTGATTGAAGAACTTCAGGAAGAAAATA
CAGATCTGTTAGTGATTGTGTCGGATTGGTTAATGCCTGGGGCAAAAGGAGATGAATTCCTGATTCAAGTCCACCAGCAG
TTCCCAGGGGTCGTCAAGATTTTGCTGACTGGTCAAGCTGATGAAGCAGCAGTAGAACGAGCGCAGTCCCAAGCCAATCT
GTTTAATTGTTTACGCAAACCCTGGAATGAAAGTGATCTGATCCAATGTATTCAATCAGCCTTAGGAACAGTGTAA

Upstream 100 bases:

>100_bases
ATCAGGGTACTCTAAGCTTGGACTCCGTTCCTGGTCGCACAACCTTTACGGTGACCTTGCCCATGTCTGCCAATCTGACC
CCTCAACCGACTCCAGCCCT

Downstream 100 bases:

>100_bases
AGACTAATCAGGACGATGCCTAAACCCATAATTGTTTGTGTGGATGATGAAATCGCAGTCCTAGATAGCCTCAGACGTGA
GCTATCTGAAGTGTTTGAAG

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MTKLAILCVDDEVIILNSLLRQLQTAFDDHYIYETAENASEALELIEELQEENTDLLVIVSDWLMPGAKGDEFLIQVHQQ
FPGVVKILLTGQADEAAVERAQSQANLFNCLRKPWNESDLIQCIQSALGTV

Sequences:

>Translated_131_residues
MTKLAILCVDDEVIILNSLLRQLQTAFDDHYIYETAENASEALELIEELQEENTDLLVIVSDWLMPGAKGDEFLIQVHQQ
FPGVVKILLTGQADEAAVERAQSQANLFNCLRKPWNESDLIQCIQSALGTV
>Mature_130_residues
TKLAILCVDDEVIILNSLLRQLQTAFDDHYIYETAENASEALELIEELQEENTDLLVIVSDWLMPGAKGDEFLIQVHQQF
PGVVKILLTGQADEAAVERAQSQANLFNCLRKPWNESDLIQCIQSALGTV

Specific function: Probable member of the two-component regulatory system involved in the regulation of the [NiFe] hydrogenase activity. HupR1 is probably phosphorylated by the sensory component and then acts in conjunction with sigma-54 as a transcriptional activator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 14674; Mature: 14543

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLAILCVDDEVIILNSLLRQLQTAFDDHYIYETAENASEALELIEELQEENTDLLVIV
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEE
SDWLMPGAKGDEFLIQVHQQFPGVVKILLTGQADEAAVERAQSQANLFNCLRKPWNESDL
ECCCCCCCCCCHHHHHHHHHCCHHEEHEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
IQCIQSALGTV
HHHHHHHHCCC
>Mature Secondary Structure 
TKLAILCVDDEVIILNSLLRQLQTAFDDHYIYETAENASEALELIEELQEENTDLLVIV
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEE
SDWLMPGAKGDEFLIQVHQQFPGVVKILLTGQADEAAVERAQSQANLFNCLRKPWNESDL
ECCCCCCCCCCHHHHHHHHHCCHHEEHEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
IQCIQSALGTV
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1885559; 8497190; 2007559 [H]