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The map label for this gene is yfgC [C]

Identifier: 158336652

GI number: 158336652

Start: 3560885

End: 3561745

Strand: Direct

Name: yfgC [C]

Synonym: AM1_3520

Alternate gene names: 158336652

Gene position: 3560885-3561745 (Clockwise)

Preceding gene: 158336651

Following gene: 158336656

Centisome position: 54.75

GC content: 51.1

Gene sequence:

>861_bases
ATGAAAGATGCAGTTTCCCAGCCGCCCATTTCTAAGCGTGTTGTTGCTGCTACTACTTTAGCAACGAGTCTTGCGATCGC
AACTCCAAATCCAGCCCAAGCAATTCCTCTGAGAGATTTGATCTTCCGGGGAATTCAAGTGATTCAGCTGTCTAATCTTT
CCAATCAGCAGGAACGGGAGCTAGGCGAGCAGATTCACCGTAACCTGCAAAGCCAAGGGATGCGCTTACACCAAGGGCGG
ACCCTAAACCGCTATGTCAATCGTATTGGCCAGCGTTTGGTGGAAGCGGGTGCCAGACGACGGAAAGTGGCCTATCGGTT
TCAGGTCGTCGACGATAAACGGGTGAATGCCTTTGCCACCATGGGAGGCCGCGTTTATGTCACCACGGGCCTGATTAATA
CCGCAGATAATGAAGCCCAGCTGGCTAGTGTGATTGGTCATGAAATTGGCCATATTGACCGGAAGCACTTGGTCAAGCAA
ATTCGCAAAACCATGGTTGCTCAAGGATTAACCACAGCCATCACGGGTTCCAACCGGAGTCAAGTTGCCAATATTGGGGT
TAATTTATTGGTCAGTCGCCCCCAAAGCCGGAGTGACGAATATGATGCAGATCGGGAAGGGCTGCGTATTCTGAGAGCAG
CAGATTATGCTACCTCAGCCATGCCAGCATTTATGCGCAAACTAGTGTCTAGCCGATCGACTCCTACGTTCTTAAGTACA
CACCCCGCAGTCCCCGATCGCGTCGTGCGTCTGGAACAAGATATTCAGTCCGGTCCTAAAAATGTGTGCGATAGCAACCC
CGATCTTAGAAGTTGTGGTCTCAGTGAAAGCCGCTATCGGCAACTCGTGGGCAGCCGTTAA

Upstream 100 bases:

>100_bases
CGTCATAATTAGCACATAGGAATTGTGTATCTCTTTGCTCAATACGCTCAAGCGGGCAGAGAGTTACGCCTATGATGCTG
TCTCATCGTCTGGTGACTTT

Downstream 100 bases:

>100_bases
GGGGGACAACTATCTCTATGCCTTCAGCTTGTGACGGTCTTACAAAGGCTGGGTAATCAGATCCACTCTTTGAATTTTGT
TTTGATAGACTTCGGACACG

Product: M48 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKDAVSQPPISKRVVAATTLATSLAIATPNPAQAIPLRDLIFRGIQVIQLSNLSNQQERELGEQIHRNLQSQGMRLHQGR
TLNRYVNRIGQRLVEAGARRRKVAYRFQVVDDKRVNAFATMGGRVYVTTGLINTADNEAQLASVIGHEIGHIDRKHLVKQ
IRKTMVAQGLTTAITGSNRSQVANIGVNLLVSRPQSRSDEYDADREGLRILRAADYATSAMPAFMRKLVSSRSTPTFLST
HPAVPDRVVRLEQDIQSGPKNVCDSNPDLRSCGLSESRYRQLVGSR

Sequences:

>Translated_286_residues
MKDAVSQPPISKRVVAATTLATSLAIATPNPAQAIPLRDLIFRGIQVIQLSNLSNQQERELGEQIHRNLQSQGMRLHQGR
TLNRYVNRIGQRLVEAGARRRKVAYRFQVVDDKRVNAFATMGGRVYVTTGLINTADNEAQLASVIGHEIGHIDRKHLVKQ
IRKTMVAQGLTTAITGSNRSQVANIGVNLLVSRPQSRSDEYDADREGLRILRAADYATSAMPAFMRKLVSSRSTPTFLST
HPAVPDRVVRLEQDIQSGPKNVCDSNPDLRSCGLSESRYRQLVGSR
>Mature_286_residues
MKDAVSQPPISKRVVAATTLATSLAIATPNPAQAIPLRDLIFRGIQVIQLSNLSNQQERELGEQIHRNLQSQGMRLHQGR
TLNRYVNRIGQRLVEAGARRRKVAYRFQVVDDKRVNAFATMGGRVYVTTGLINTADNEAQLASVIGHEIGHIDRKHLVKQ
IRKTMVAQGLTTAITGSNRSQVANIGVNLLVSRPQSRSDEYDADREGLRILRAADYATSAMPAFMRKLVSSRSTPTFLST
HPAVPDRVVRLEQDIQSGPKNVCDSNPDLRSCGLSESRYRQLVGSR

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TPR repeat [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=215, Percent_Identity=31.6279069767442, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI87082185, Length=245, Percent_Identity=27.7551020408163, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011716
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48; PF07720 TPR_3 [H]

EC number: NA

Molecular weight: Translated: 31658; Mature: 31658

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDAVSQPPISKRVVAATTLATSLAIATPNPAQAIPLRDLIFRGIQVIQLSNLSNQQERE
CCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHCCHHEEEECCCCCHHHHH
LGEQIHRNLQSQGMRLHQGRTLNRYVNRIGQRLVEAGARRRKVAYRFQVVDDKRVNAFAT
HHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHEE
MGGRVYVTTGLINTADNEAQLASVIGHEIGHIDRKHLVKQIRKTMVAQGLTTAITGSNRS
CCCEEEEEECCEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHEECCCCHH
QVANIGVNLLVSRPQSRSDEYDADREGLRILRAADYATSAMPAFMRKLVSSRSTPTFLST
HHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
HPAVPDRVVRLEQDIQSGPKNVCDSNPDLRSCGLSESRYRQLVGSR
CCCCHHHHHHHHHHHHCCCHHHCCCCCCHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MKDAVSQPPISKRVVAATTLATSLAIATPNPAQAIPLRDLIFRGIQVIQLSNLSNQQERE
CCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHCCHHEEEECCCCCHHHHH
LGEQIHRNLQSQGMRLHQGRTLNRYVNRIGQRLVEAGARRRKVAYRFQVVDDKRVNAFAT
HHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHEE
MGGRVYVTTGLINTADNEAQLASVIGHEIGHIDRKHLVKQIRKTMVAQGLTTAITGSNRS
CCCEEEEEECCEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHEECCCCHH
QVANIGVNLLVSRPQSRSDEYDADREGLRILRAADYATSAMPAFMRKLVSSRSTPTFLST
HHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
HPAVPDRVVRLEQDIQSGPKNVCDSNPDLRSCGLSESRYRQLVGSR
CCCCHHHHHHHHHHHHCCCHHHCCCCCCHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]