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The map label for this gene is pchR [H]

Identifier: 158336518

GI number: 158336518

Start: 3409723

End: 3410748

Strand: Direct

Name: pchR [H]

Synonym: AM1_3382

Alternate gene names: 158336518

Gene position: 3409723-3410748 (Clockwise)

Preceding gene: 158336516

Following gene: 158336519

Centisome position: 52.43

GC content: 49.22

Gene sequence:

>1026_bases
ATGCGAACCACCATCAGGGAAACAGAGCTACAAACTCTATTTGCAGAAGCTCAACAGAACGGTGAATCCATCTTTCAACA
CAAAGGTTCCGATCTGCTGATCTGCCCGCCGAGTCAGGTCGGTAGTGGGCAGCATCATCTCATTACCCTACGAGATGGAA
TCGTATTAAAAATTGCAGATGGGCGTTTTCACCAAACCACAACCATCGAAAGCCACAGAGGCCCTGACGAACCCCTAGTC
TCTAAATTTTGTTTATCCAGTCGCTTTCAGGTACAGACGCCTCGTGTCAGTGGTATTCCAGAAGACTATACAGAATCAGC
AGGGCATCACTACTTGTTTTCCTTGTCTGATGTAGTCGAATTTGAAACCTTCCAGGGTGAAGAGCGATTTCAGGTTGTGG
CGTTTGAGTGGAGCCAGGACTACGTAAGGTCTTTTATCTCTGCTGCCGATGGCCTACCCCAGCCGTTGCAGAAGCTGTCT
GACCATCAGACCCTGAAGCGATTCCACCAGCCTCTGGGAAAAATGACTCCTGCAATGGCCCAGATTATTCAGCAGGTTTT
GGGCTGTCCTTACCAAGGGATGGTCAAGAAGATGTATTTAGAAAGTAAGGCACTAGAACTTCTGACATTGCAGTTAACAG
CTTGGAGTGAAAACCAGCACCAAACTAAGATCAGCCAGCTGCTACCCGATGATCTAGAGCGAATTCAGCAAGCCTCTCAT
GTGCTCAATCAGAACCTCAATGCACCCCCTTCCCTGATGGGCTTGGCACGGCAAGTGGGGCTTAATGACTACAAACTCAA
ACTGGGGTTTCGGCAAATGTTTGGCACCACTGTGTTTGGCTATTCACAAGCTAAACGGCTGCAGTATGCTCGGCAGTTGC
TGGCAGCTCAGGATCTGAGCATTCCGGGAGTCGCTCAATCTGTGGGATATGCCAGCCCTACGTCTTTCACAGCAGCCTTC
AAACGACGATTTGGCCTGAGTCCCAAAGCCTATCAAATGGCCTGCCGGGGAAAAAATCCTGTTTGA

Upstream 100 bases:

>100_bases
ACATCCAGTTTGGTGGCGCATAAAGCAGACATAATAGTTTAGATAACTGAGAATAATTTCAAATACTATAGGTTCATTCC
TGAAACCAATCACTGACGCT

Downstream 100 bases:

>100_bases
AGAGAAAACAATCCTGTTTGAAGAGAAAAAGCTGATGCTTCCCTCCTATCATGCCTTCAGAATAATTTATTGAGATTCAT
TCTTGATAAATTCTGGCGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MRTTIRETELQTLFAEAQQNGESIFQHKGSDLLICPPSQVGSGQHHLITLRDGIVLKIADGRFHQTTTIESHRGPDEPLV
SKFCLSSRFQVQTPRVSGIPEDYTESAGHHYLFSLSDVVEFETFQGEERFQVVAFEWSQDYVRSFISAADGLPQPLQKLS
DHQTLKRFHQPLGKMTPAMAQIIQQVLGCPYQGMVKKMYLESKALELLTLQLTAWSENQHQTKISQLLPDDLERIQQASH
VLNQNLNAPPSLMGLARQVGLNDYKLKLGFRQMFGTTVFGYSQAKRLQYARQLLAAQDLSIPGVAQSVGYASPTSFTAAF
KRRFGLSPKAYQMACRGKNPV

Sequences:

>Translated_341_residues
MRTTIRETELQTLFAEAQQNGESIFQHKGSDLLICPPSQVGSGQHHLITLRDGIVLKIADGRFHQTTTIESHRGPDEPLV
SKFCLSSRFQVQTPRVSGIPEDYTESAGHHYLFSLSDVVEFETFQGEERFQVVAFEWSQDYVRSFISAADGLPQPLQKLS
DHQTLKRFHQPLGKMTPAMAQIIQQVLGCPYQGMVKKMYLESKALELLTLQLTAWSENQHQTKISQLLPDDLERIQQASH
VLNQNLNAPPSLMGLARQVGLNDYKLKLGFRQMFGTTVFGYSQAKRLQYARQLLAAQDLSIPGVAQSVGYASPTSFTAAF
KRRFGLSPKAYQMACRGKNPV
>Mature_341_residues
MRTTIRETELQTLFAEAQQNGESIFQHKGSDLLICPPSQVGSGQHHLITLRDGIVLKIADGRFHQTTTIESHRGPDEPLV
SKFCLSSRFQVQTPRVSGIPEDYTESAGHHYLFSLSDVVEFETFQGEERFQVVAFEWSQDYVRSFISAADGLPQPLQKLS
DHQTLKRFHQPLGKMTPAMAQIIQQVLGCPYQGMVKKMYLESKALELLTLQLTAWSENQHQTKISQLLPDDLERIQQASH
VLNQNLNAPPSLMGLARQVGLNDYKLKLGFRQMFGTTVFGYSQAKRLQYARQLLAAQDLSIPGVAQSVGYASPTSFTAAF
KRRFGLSPKAYQMACRGKNPV

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38287; Mature: 38287

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTTIRETELQTLFAEAQQNGESIFQHKGSDLLICPPSQVGSGQHHLITLRDGIVLKIAD
CCCCHHHHHHHHHHHHHHHCHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEEC
GRFHQTTTIESHRGPDEPLVSKFCLSSRFQVQTPRVSGIPEDYTESAGHHYLFSLSDVVE
CCEEECEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHCCCCEEEEEHHHHHH
FETFQGEERFQVVAFEWSQDYVRSFISAADGLPQPLQKLSDHQTLKRFHQPLGKMTPAMA
HHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QIIQQVLGCPYQGMVKKMYLESKALELLTLQLTAWSENQHQTKISQLLPDDLERIQQASH
HHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHCHHHHHHHHHHHH
VLNQNLNAPPSLMGLARQVGLNDYKLKLGFRQMFGTTVFGYSQAKRLQYARQLLAAQDLS
HHHCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IPGVAQSVGYASPTSFTAAFKRRFGLSPKAYQMACRGKNPV
CCCHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MRTTIRETELQTLFAEAQQNGESIFQHKGSDLLICPPSQVGSGQHHLITLRDGIVLKIAD
CCCCHHHHHHHHHHHHHHHCHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEEC
GRFHQTTTIESHRGPDEPLVSKFCLSSRFQVQTPRVSGIPEDYTESAGHHYLFSLSDVVE
CCEEECEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHCCCCEEEEEHHHHHH
FETFQGEERFQVVAFEWSQDYVRSFISAADGLPQPLQKLSDHQTLKRFHQPLGKMTPAMA
HHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QIIQQVLGCPYQGMVKKMYLESKALELLTLQLTAWSENQHQTKISQLLPDDLERIQQASH
HHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHCHHHHHHHHHHHH
VLNQNLNAPPSLMGLARQVGLNDYKLKLGFRQMFGTTVFGYSQAKRLQYARQLLAAQDLS
HHHCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IPGVAQSVGYASPTSFTAAFKRRFGLSPKAYQMACRGKNPV
CCCHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]