Click here to switch to the map view.

The map label for this gene is pchR [H]

Identifier: 158336496

GI number: 158336496

Start: 3393995

End: 3394978

Strand: Reverse

Name: pchR [H]

Synonym: AM1_3360

Alternate gene names: 158336496

Gene position: 3394978-3393995 (Counterclockwise)

Preceding gene: 158336497

Following gene: 158336494

Centisome position: 52.2

GC content: 47.05

Gene sequence:

>984_bases
ATGCCTAAAACCCTCACCAATGCCGATATTATTGCTTTTCTACAGAATAATAGTGACGCCTCTACCCTTCTCAATACCGA
CCAAGATGAACAATGTATTGCCCTCCCAGCCCAGTTTGGCAGTGGATATATCCGAAGACATCTCTTGCAGCCAGGGCTGA
TCTTAGATATTGCAGATGTTGAGCTGAACTACAACCATGTCAACCGCATTCAGTTACATTCCCCTCAGATGCCCTTGACC
GCTAGTTTTTACTTATCGGGTCAGGCCGTTGTCACCAATGAAGCCTTGCCTACCCCCCAGACTGAACGAGCTGGGAATAA
CTATTTGTACCATTTACCTCAAACTGCTGAAATTGAGGAATATCACGCCAATCAGCGGATCTGTTGTTTAAAGCTGTATT
TTAACTTAGACCATTTTCCGCAGCTTAATCTCCAACAACTCGCGACCCAGTCATCAAATTTAAGCACCCCCATCTACACT
CCCCGTAAGCTGTACTGTGAGAATCCAACGACCCCTAGAATGCACTTAGTGCTTGAACAACTGGCGACTTGCTCCTTGCA
AGGGATTGCCAGAAATATTTATCTGGCGGGTAAAGCTCTTGAACTTCTGGGCTTGCAGTTGGAAGCAATCATCACGCCCC
AGGCTTCGCTACCAGCCTGCCTTCATCCCACTGATGTTGAACAGATCCACAAAGCCCGCTACATCTTGATTCAGAACTAT
TTAAACCCTCCATCCTTAATGGAATTAGCCCGTCAAGTGGGTATTAACGATCGCAAACTCAAGCAAGGCTTTCGCGATGT
CTTTGGCACGTCTGTATTTAACTACTTGTACCAATACCGTATGGACAAAGCCCGTCAGCTGCTCACTTCTGGGCAATGGA
ATGTGACCGAAACTGCCCATGCCGTGGGGTATGCCAGTCGAACTGCCTTTGTCGCCGCCTTTACCAAGCAGTTTAAGGTG
AGCCCTAATACGTATCGTCCTTAA

Upstream 100 bases:

>100_bases
TTCGCAGCATCGGGCCCAAAATCTATTTTGATAAATAGGAATTATTCTTATTACATTAGACTGGAGTGTAGACACTCTGA
TAAATCCCTCTGCAATGGGT

Downstream 100 bases:

>100_bases
CGATGGCCCGCATTGACTTTGAAAAGGCAACTATCAATACCTTGATTTTCTGACTTCTAATAAATAGTCCTGCTTTCAGA
CAGAAAAAGTCCGTTTGCAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MPKTLTNADIIAFLQNNSDASTLLNTDQDEQCIALPAQFGSGYIRRHLLQPGLILDIADVELNYNHVNRIQLHSPQMPLT
ASFYLSGQAVVTNEALPTPQTERAGNNYLYHLPQTAEIEEYHANQRICCLKLYFNLDHFPQLNLQQLATQSSNLSTPIYT
PRKLYCENPTTPRMHLVLEQLATCSLQGIARNIYLAGKALELLGLQLEAIITPQASLPACLHPTDVEQIHKARYILIQNY
LNPPSLMELARQVGINDRKLKQGFRDVFGTSVFNYLYQYRMDKARQLLTSGQWNVTETAHAVGYASRTAFVAAFTKQFKV
SPNTYRP

Sequences:

>Translated_327_residues
MPKTLTNADIIAFLQNNSDASTLLNTDQDEQCIALPAQFGSGYIRRHLLQPGLILDIADVELNYNHVNRIQLHSPQMPLT
ASFYLSGQAVVTNEALPTPQTERAGNNYLYHLPQTAEIEEYHANQRICCLKLYFNLDHFPQLNLQQLATQSSNLSTPIYT
PRKLYCENPTTPRMHLVLEQLATCSLQGIARNIYLAGKALELLGLQLEAIITPQASLPACLHPTDVEQIHKARYILIQNY
LNPPSLMELARQVGINDRKLKQGFRDVFGTSVFNYLYQYRMDKARQLLTSGQWNVTETAHAVGYASRTAFVAAFTKQFKV
SPNTYRP
>Mature_326_residues
PKTLTNADIIAFLQNNSDASTLLNTDQDEQCIALPAQFGSGYIRRHLLQPGLILDIADVELNYNHVNRIQLHSPQMPLTA
SFYLSGQAVVTNEALPTPQTERAGNNYLYHLPQTAEIEEYHANQRICCLKLYFNLDHFPQLNLQQLATQSSNLSTPIYTP
RKLYCENPTTPRMHLVLEQLATCSLQGIARNIYLAGKALELLGLQLEAIITPQASLPACLHPTDVEQIHKARYILIQNYL
NPPSLMELARQVGINDRKLKQGFRDVFGTSVFNYLYQYRMDKARQLLTSGQWNVTETAHAVGYASRTAFVAAFTKQFKVS
PNTYRP

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36938; Mature: 36806

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTLTNADIIAFLQNNSDASTLLNTDQDEQCIALPAQFGSGYIRRHLLQPGLILDIADV
CCCCCCCCEEEEEEECCCCHHHHCCCCCCCCEEEECHHHCCHHHHHHHCCCCCEEEEEEE
ELNYNHVNRIQLHSPQMPLTASFYLSGQAVVTNEALPTPQTERAGNNYLYHLPQTAEIEE
EECCCCCCEEEEECCCCCEEEEEEECCCEEEECCCCCCCCHHCCCCCEEEECCCCCCHHH
YHANQRICCLKLYFNLDHFPQLNLQQLATQSSNLSTPIYTPRKLYCENPTTPRMHLVLEQ
HHCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHH
LATCSLQGIARNIYLAGKALELLGLQLEAIITPQASLPACLHPTDVEQIHKARYILIQNY
HHHHHHHHHHHHEEECCHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHEEECC
LNPPSLMELARQVGINDRKLKQGFRDVFGTSVFNYLYQYRMDKARQLLTSGQWNVTETAH
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AVGYASRTAFVAAFTKQFKVSPNTYRP
HHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PKTLTNADIIAFLQNNSDASTLLNTDQDEQCIALPAQFGSGYIRRHLLQPGLILDIADV
CCCCCCCEEEEEEECCCCHHHHCCCCCCCCEEEECHHHCCHHHHHHHCCCCCEEEEEEE
ELNYNHVNRIQLHSPQMPLTASFYLSGQAVVTNEALPTPQTERAGNNYLYHLPQTAEIEE
EECCCCCCEEEEECCCCCEEEEEEECCCEEEECCCCCCCCHHCCCCCEEEECCCCCCHHH
YHANQRICCLKLYFNLDHFPQLNLQQLATQSSNLSTPIYTPRKLYCENPTTPRMHLVLEQ
HHCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHH
LATCSLQGIARNIYLAGKALELLGLQLEAIITPQASLPACLHPTDVEQIHKARYILIQNY
HHHHHHHHHHHHEEECCHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHEEECC
LNPPSLMELARQVGINDRKLKQGFRDVFGTSVFNYLYQYRMDKARQLLTSGQWNVTETAH
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AVGYASRTAFVAAFTKQFKVSPNTYRP
HHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]