Click here to switch to the map view.

The map label for this gene is ykwD [H]

Identifier: 158336467

GI number: 158336467

Start: 3365392

End: 3366015

Strand: Reverse

Name: ykwD [H]

Synonym: AM1_3331

Alternate gene names: 158336467

Gene position: 3366015-3365392 (Counterclockwise)

Preceding gene: 158336473

Following gene: 158336466

Centisome position: 51.76

GC content: 48.88

Gene sequence:

>624_bases
ATGAAACTAGCCCGATCGTTGCCTGTTTTTGTCTATTCCGGGGGGAATCAATTCATGCACATCCGTCAGGAGCTTCAGGC
TCCCCGTTCGGCTATCCATAGGAGGTGGGCTTGGGCTCTACCATTAGCTCTGGGCCTCAGCTTAGTCGCAGCACCCAGCT
TATCCCAAACCCTACATACTCCATCTTTAGGCACTAGTGCCTCAACTCTACCTGCTCAATCTAGCACCATCGCTCAGATG
GAGACTGAGGTTTTACAGCGGATCAATCAAAAACGTCAACGTCAGGGTTTACCGGCCTTACAACTCAATCCCAGATTGTC
CTTAGTGGCCCGTTCCCATAGCCAGCAAATGGCTCAATATAACTTTTACAGCCATATTGATCCCCAGGGTCGCAACCATC
GCCGTCGAGTCGAGGCGTTAGGATTGCGGGCATATCTCATTGGTGAAAATCTGATGAAATGTATTCGATCTTCAGATCCT
GTCGGTTTATCTGTCGAAAGCTGGATGAGAAGTCCCGGCCATCGTAAAAATATTTTGCTACCGGAAATGCAGGAGACGGG
CGTAGGAATTTGGCGTAAGGGTCAAACTTACTATGTCACGCAAATCTATATGGAGCCCAAATAG

Upstream 100 bases:

>100_bases
ATTACCGAGTTCTTCACTTATTAGTGTCAAAGTTATACGCAAGTTGGACCAAAAGTCTGGCTTACAAAGACGCGATCGCA
AACATGGACTTGTCATACTC

Downstream 100 bases:

>100_bases
AGCCGAGCGGTCACTCTTTTTATACCTATTTATTCGGCGATATCCTACCTATTATTTGATAGGTTGAAGAAGATGTTTTG
CGATCGCACCTGTGTCTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKLARSLPVFVYSGGNQFMHIRQELQAPRSAIHRRWAWALPLALGLSLVAAPSLSQTLHTPSLGTSASTLPAQSSTIAQM
ETEVLQRINQKRQRQGLPALQLNPRLSLVARSHSQQMAQYNFYSHIDPQGRNHRRRVEALGLRAYLIGENLMKCIRSSDP
VGLSVESWMRSPGHRKNILLPEMQETGVGIWRKGQTYYVTQIYMEPK

Sequences:

>Translated_207_residues
MKLARSLPVFVYSGGNQFMHIRQELQAPRSAIHRRWAWALPLALGLSLVAAPSLSQTLHTPSLGTSASTLPAQSSTIAQM
ETEVLQRINQKRQRQGLPALQLNPRLSLVARSHSQQMAQYNFYSHIDPQGRNHRRRVEALGLRAYLIGENLMKCIRSSDP
VGLSVESWMRSPGHRKNILLPEMQETGVGIWRKGQTYYVTQIYMEPK
>Mature_207_residues
MKLARSLPVFVYSGGNQFMHIRQELQAPRSAIHRRWAWALPLALGLSLVAAPSLSQTLHTPSLGTSASTLPAQSSTIAQM
ETEVLQRINQKRQRQGLPALQLNPRLSLVARSHSQQMAQYNFYSHIDPQGRNHRRRVEALGLRAYLIGENLMKCIRSSDP
VGLSVESWMRSPGHRKNILLPEMQETGVGIWRKGQTYYVTQIYMEPK

Specific function: Unknown

COG id: COG2340

COG function: function code S; Uncharacterized protein with SCP/PR1 domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SCP domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014044
- InterPro:   IPR014258 [H]

Pfam domain/function: PF00188 SCP [H]

EC number: NA

Molecular weight: Translated: 23438; Mature: 23438

Theoretical pI: Translated: 11.25; Mature: 11.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLARSLPVFVYSGGNQFMHIRQELQAPRSAIHRRWAWALPLALGLSLVAAPSLSQTLHT
CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
PSLGTSASTLPAQSSTIAQMETEVLQRINQKRQRQGLPALQLNPRLSLVARSHSQQMAQY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHEEHHHHHHHHHHH
NFYSHIDPQGRNHRRRVEALGLRAYLIGENLMKCIRSSDPVGLSVESWMRSPGHRKNILL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCCCCCCCC
PEMQETGVGIWRKGQTYYVTQIYMEPK
CCHHHCCCCEEECCCEEEEEEEEECCC
>Mature Secondary Structure
MKLARSLPVFVYSGGNQFMHIRQELQAPRSAIHRRWAWALPLALGLSLVAAPSLSQTLHT
CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
PSLGTSASTLPAQSSTIAQMETEVLQRINQKRQRQGLPALQLNPRLSLVARSHSQQMAQY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHEEHHHHHHHHHHH
NFYSHIDPQGRNHRRRVEALGLRAYLIGENLMKCIRSSDPVGLSVESWMRSPGHRKNILL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCCCCCCCC
PEMQETGVGIWRKGQTYYVTQIYMEPK
CCHHHCCCCEEECCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]