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The map label for this gene is yjgF [C]

Identifier: 158336436

GI number: 158336436

Start: 3326781

End: 3327170

Strand: Direct

Name: yjgF [C]

Synonym: AM1_3300

Alternate gene names: 158336436

Gene position: 3326781-3327170 (Clockwise)

Preceding gene: 158336435

Following gene: 158336437

Centisome position: 51.15

GC content: 51.79

Gene sequence:

>390_bases
ATGTCCCATGATGTGATTCGTACCGATCATGCTCCTGCACCGGTCGGTCCCTATAACCAAGCCATTCGAGCCCAGGGCGC
AATAGTGTTCGCATCCGGGCAAATTGCGTTAGATCCAGCTTCGGGTGCCTTAGTGGGTGGCGATGATGTGGCCCAGCAGA
CGGAGCAAGTGATGAAAAATTTGGAAGCTGTATTGACTTCAGCAGGCGTAGGCTGGTCCCAGGTGGTCAAAACGACGGTT
TTCTTGGCAGATATGAATGATTTTGCCACGGTAAATGGTGTGTATGCCCGTTATTTTGATGAAGCCACTGCACCTGCCCG
TGCCTGTGTGGAAGTGGCTCGGTTACCTAAGGATGTCTTAGTAGAAATCGACTGTATTGCGGTGGCCTAG

Upstream 100 bases:

>100_bases
GGTTAGTCTGATCGGTAAATTGTGGTGGGTATCAGCCATCAGTTGACGACGATTCCACAACCAGGCAGGATCATCGCAAG
TGTTTAGTTGGCTGTGTCCT

Downstream 100 bases:

>100_bases
GGCCATTGACCCGGAACCTAAACGGATCATCTGCAGTCGTAGGAAATTACGGCAACGCCAACCCGCATTGATGAATGAAC
CAGCGGTTTTGGGTTTTAAG

Product: YigF family translation initiation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSHDVIRTDHAPAPVGPYNQAIRAQGAIVFASGQIALDPASGALVGGDDVAQQTEQVMKNLEAVLTSAGVGWSQVVKTTV
FLADMNDFATVNGVYARYFDEATAPARACVEVARLPKDVLVEIDCIAVA

Sequences:

>Translated_129_residues
MSHDVIRTDHAPAPVGPYNQAIRAQGAIVFASGQIALDPASGALVGGDDVAQQTEQVMKNLEAVLTSAGVGWSQVVKTTV
FLADMNDFATVNGVYARYFDEATAPARACVEVARLPKDVLVEIDCIAVA
>Mature_128_residues
SHDVIRTDHAPAPVGPYNQAIRAQGAIVFASGQIALDPASGALVGGDDVAQQTEQVMKNLEAVLTSAGVGWSQVVKTTVF
LADMNDFATVNGVYARYFDEATAPARACVEVARLPKDVLVEIDCIAVA

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=126, Percent_Identity=47.6190476190476, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=50.4, Blast_Score=119, Evalue=5e-29,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=46.8253968253968, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI1787245, Length=127, Percent_Identity=32.2834645669291, Blast_Score=69, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=129, Percent_Identity=47.2868217054264, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71982075, Length=129, Percent_Identity=47.2868217054264, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=129, Percent_Identity=47.2868217054264, Blast_Score=114, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=39.0243902439024, Blast_Score=89, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=45, Blast_Score=83, Evalue=1e-17,
Organism=Drosophila melanogaster, GI19921376, Length=126, Percent_Identity=47.6190476190476, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13530; Mature: 13399

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDVIRTDHAPAPVGPYNQAIRAQGAIVFASGQIALDPASGALVGGDDVAQQTEQVMKN
CCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCEEEECCCCCCEECCHHHHHHHHHHHHH
LEAVLTSAGVGWSQVVKTTVFLADMNDFATVNGVYARYFDEATAPARACVEVARLPKDVL
HHHHHHHCCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHE
VEIDCIAVA
EEEEEEEEC
>Mature Secondary Structure 
SHDVIRTDHAPAPVGPYNQAIRAQGAIVFASGQIALDPASGALVGGDDVAQQTEQVMKN
CCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCEEEECCCCCCEECCHHHHHHHHHHHHH
LEAVLTSAGVGWSQVVKTTVFLADMNDFATVNGVYARYFDEATAPARACVEVARLPKDVL
HHHHHHHCCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHE
VEIDCIAVA
EEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7787182; 8590279; 8905231 [H]