Click here to switch to the map view.

The map label for this gene is 158336391

Identifier: 158336391

GI number: 158336391

Start: 3286324

End: 3287037

Strand: Direct

Name: 158336391

Synonym: AM1_3253

Alternate gene names: NA

Gene position: 3286324-3287037 (Clockwise)

Preceding gene: 158336389

Following gene: 158336395

Centisome position: 50.53

GC content: 39.64

Gene sequence:

>714_bases
ATGGAATATTTTCAAAAAGCTAATGAGCTTTATGATTTAGGGCAGTTTGAAGAGGCAGTAATGACTTATGATCAAGCTCT
TCAAGTTAATCATAAGGATGATGCAGTTTGGTTTAGACGAGGTATCTCTCTAGGTAACTTGGGTCGTTATGAGGAAGCAA
TTGATAGCTTGGATCATGCTCTAGAGATTCAACCAAGTTGGTATGAAGCTTGGTATAGTCGAGCGCTTTATTTACACTGC
TTAGGCAATAATCGTGAGGCGATTACTAGCCTTCATAGTGCATTAAAGATTCAGCCAAACTATCTTTTAGCTTGGGACAT
GCGTGGACTGATTCTAATAGAATCAGGTCGTTTTGAAGAAGCTCTTGCTAGCTTCGATCATGCTTTAGATATTGAACCAG
ATGATGTTCAAATTTGGATAAATAAGGCAGGTACCCAATTACTATTAGGGCGTAAGAAAGAAGCAACTCACAGCCTCAAG
CAGGCTCTAGAAGTTACCCCAGAAAATTATCCAGATTGGAAAATGCTTGGAGACATGCTACTCGATCTAGGCCAATATGA
AGAAGCAATTACGAGCTTTGAGCATGCTCTAGATATAAAGCCAAAAGATTTTGAAATCTGGTTCCTCCGGGGAATTGCTT
TACGGAAGTTAGGTCGTTATGTAAGAGCAATTATAAGTTGCAGTAGGGCGCTCTTCCTGAAAGTAAAAACCTAG

Upstream 100 bases:

>100_bases
CTAAGCTTTGCAAGGATGCTTGCAATTGAACGAGGTCATGGAAAATTTTGATCACACGGTATGTCCGACCATCATTAATA
AGCAATCTTAAAGCAAGCAT

Downstream 100 bases:

>100_bases
AAAAACCAAATAGAGTAATGCTTCCAGGCTCCCAGATACTTGAGCCCCTAGAGCAAGATACGGAGTCGATGGCTAACAAG
ATTCGCGCAAGACCTTCGGT

Product: TPR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MEYFQKANELYDLGQFEEAVMTYDQALQVNHKDDAVWFRRGISLGNLGRYEEAIDSLDHALEIQPSWYEAWYSRALYLHC
LGNNREAITSLHSALKIQPNYLLAWDMRGLILIESGRFEEALASFDHALDIEPDDVQIWINKAGTQLLLGRKKEATHSLK
QALEVTPENYPDWKMLGDMLLDLGQYEEAITSFEHALDIKPKDFEIWFLRGIALRKLGRYVRAIISCSRALFLKVKT

Sequences:

>Translated_237_residues
MEYFQKANELYDLGQFEEAVMTYDQALQVNHKDDAVWFRRGISLGNLGRYEEAIDSLDHALEIQPSWYEAWYSRALYLHC
LGNNREAITSLHSALKIQPNYLLAWDMRGLILIESGRFEEALASFDHALDIEPDDVQIWINKAGTQLLLGRKKEATHSLK
QALEVTPENYPDWKMLGDMLLDLGQYEEAITSFEHALDIKPKDFEIWFLRGIALRKLGRYVRAIISCSRALFLKVKT
>Mature_237_residues
MEYFQKANELYDLGQFEEAVMTYDQALQVNHKDDAVWFRRGISLGNLGRYEEAIDSLDHALEIQPSWYEAWYSRALYLHC
LGNNREAITSLHSALKIQPNYLLAWDMRGLILIESGRFEEALASFDHALDIEPDDVQIWINKAGTQLLLGRKKEATHSLK
QALEVTPENYPDWKMLGDMLLDLGQYEEAITSFEHALDIKPKDFEIWFLRGIALRKLGRYVRAIISCSRALFLKVKT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 9 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI310131789, Length=132, Percent_Identity=30.3030303030303, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI310110582, Length=132, Percent_Identity=30.3030303030303, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI310123097, Length=132, Percent_Identity=30.3030303030303, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI170784867, Length=226, Percent_Identity=27.8761061946903, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI32307148, Length=200, Percent_Identity=30.5, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI32307150, Length=200, Percent_Identity=30.5, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI296531396, Length=219, Percent_Identity=23.2876712328767, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115532692, Length=200, Percent_Identity=29, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI115532690, Length=200, Percent_Identity=29, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647755, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24585827, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24585829, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24656717, Length=217, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI18110006, Length=217, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 27458; Mature: 27458

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYFQKANELYDLGQFEEAVMTYDQALQVNHKDDAVWFRRGISLGNLGRYEEAIDSLDHA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
LEIQPSWYEAWYSRALYLHCLGNNREAITSLHSALKIQPNYLLAWDMRGLILIESGRFEE
EECCCHHHHHHHHHEEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCHHH
ALASFDHALDIEPDDVQIWINKAGTQLLLGRKKEATHSLKQALEVTPENYPDWKMLGDML
HHHHHHHCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
LDLGQYEEAITSFEHALDIKPKDFEIWFLRGIALRKLGRYVRAIISCSRALFLKVKT
HHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
>Mature Secondary Structure
MEYFQKANELYDLGQFEEAVMTYDQALQVNHKDDAVWFRRGISLGNLGRYEEAIDSLDHA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
LEIQPSWYEAWYSRALYLHCLGNNREAITSLHSALKIQPNYLLAWDMRGLILIESGRFEE
EECCCHHHHHHHHHEEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCHHH
ALASFDHALDIEPDDVQIWINKAGTQLLLGRKKEATHSLKQALEVTPENYPDWKMLGDML
HHHHHHHCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
LDLGQYEEAITSFEHALDIKPKDFEIWFLRGIALRKLGRYVRAIISCSRALFLKVKT
HHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087; 9697413 [H]