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The map label for this gene is rnpA [H]

Identifier: 158336232

GI number: 158336232

Start: 3123469

End: 3123789

Strand: Reverse

Name: rnpA [H]

Synonym: AM1_3094

Alternate gene names: 158336232

Gene position: 3123789-3123469 (Counterclockwise)

Preceding gene: 158336236

Following gene: 158336231

Centisome position: 48.03

GC content: 42.37

Gene sequence:

>321_bases
ATGTTATCAACCTCCCATCGACTCAAAAAAAACCGAGAATTTAGTGTTGTGTACCGTAAAGGTAAACGCCAAAGCACAAA
ATATTTAGTGCTAAGAACCTATCGATCGGGTGCAAATTCACAAAAAAAACCAATTCGTATTGGTTTTTCGATTAGCCAAA
AAGTCAGCAAGCGAGCCGTCGTTCGTAATCGAATTAAGCGGCAGTTAAGAGCGGCATGTCGCCAGCTCCTGCCTGAATTA
CAGCCAGGTTGGGATGTAGTGATTGTTGTTCGGACGGCTGCCGTTCAGTGCGATTACTTTCTAATTTCTGACAACAATTA
A

Upstream 100 bases:

>100_bases
CTCGCCGACGTAAAGGCCGTAAGCGCTTATCCGTATAGCGAAGAGTGAGTGAGCCGAAGGCTGCTGAACGTTTTGAACCC
ATGGGCGTAGCGCAGGCTAA

Downstream 100 bases:

>100_bases
GAAAGTTATTTGCAGACGCGGAGATCCTAAATGGGTATTAAGGAGGAGGTCTACTTTGAAGGAGGGCCTCATATTGGTGA
TTTAATCTTAAATTCTTTCT

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MLSTSHRLKKNREFSVVYRKGKRQSTKYLVLRTYRSGANSQKKPIRIGFSISQKVSKRAVVRNRIKRQLRAACRQLLPEL
QPGWDVVIVVRTAAVQCDYFLISDNN

Sequences:

>Translated_106_residues
MLSTSHRLKKNREFSVVYRKGKRQSTKYLVLRTYRSGANSQKKPIRIGFSISQKVSKRAVVRNRIKRQLRAACRQLLPEL
QPGWDVVIVVRTAAVQCDYFLISDNN
>Mature_106_residues
MLSTSHRLKKNREFSVVYRKGKRQSTKYLVLRTYRSGANSQKKPIRIGFSISQKVSKRAVVRNRIKRQLRAACRQLLPEL
QPGWDVVIVVRTAAVQCDYFLISDNN

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:
GO:0000049: Ribonuclease P protein component
GO:0001682: Ribonuclease P protein component
GO:0003723: Ribonuclease P protein component
GO:0004518: Ribonuclease P protein component
GO:0004519: Ribonuclease P protein component
GO:0004526: Ribonuclease P protein component
GO:0008033: Ribonuclease P protein component
GO:0016787: Ribonuclease P protein component

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 12322; Mature: 12322

Theoretical pI: Translated: 11.90; Mature: 11.90

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTSHRLKKNREFSVVYRKGKRQSTKYLVLRTYRSGANSQKKPIRIGFSISQKVSKRAV
CCCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHH
VRNRIKRQLRAACRQLLPELQPGWDVVIVVRTAAVQCDYFLISDNN
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEEEEEEEEECCC
>Mature Secondary Structure
MLSTSHRLKKNREFSVVYRKGKRQSTKYLVLRTYRSGANSQKKPIRIGFSISQKVSKRAV
CCCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHH
VRNRIKRQLRAACRQLLPELQPGWDVVIVVRTAAVQCDYFLISDNN
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA