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The map label for this gene is ybbD [H]

Identifier: 158336220

GI number: 158336220

Start: 3109638

End: 3111254

Strand: Direct

Name: ybbD [H]

Synonym: AM1_3082

Alternate gene names: 158336220

Gene position: 3109638-3111254 (Clockwise)

Preceding gene: 158336219

Following gene: 158336221

Centisome position: 47.81

GC content: 51.14

Gene sequence:

>1617_bases
TTGACTCATTTATTGCCAGAGCCAGATTCTCTGTCTTTGCCAGAACAAGTTGCTCAAATGTTGGTCGTCCGAGCCTCCGG
CTATCTGTTCGATCATCAAATTCAATATCCCAGTTGGGAACCCAGCGCTGAGGTGCTGCGCCACTGGCTCACGGATTTAG
GAGTTGGTGGGGTGATTCTGCTAGGCGGTAGCGCCGGAGAGATTGCCTGTCGATGTCAGCAACTGCAAGAGTGGTCTGCA
ATCCCCCTATTGCTAGCGGCGGATATTGAGGAAGGCGTCGGACAACGTTTTTCGGGAGCAACCTGGTTTCCTCCACCTTT
AGCGTTAGCAGGGATGGTCCAAGCGGGAGCGGCCATCGAACAAGTTCAGCAGTCTGCTCAAGCCATGGGGGCTTGGACAG
CCCAAGAAGCTTTAGCTATCGGTTTGAACTGGGTGTTGGCTCCGGTCGTGGATGTGAATAACAATCCCCAAAACCCGGTG
ATTAATGTGCGGGCATTTGGGGAAACACCAGAGCTGGTCAGCCAATTATCTACAGCCTTTATCCAAGGAGCCCAACCCTA
TCCAGTCCTGACAACGGCGAAGCATTTCCCGGGGCATGGCGATACGGCTACGGATTCTCACTTGGATTTGCCAGTGATTC
CCCATGATTGCGATCGCATCTACAATACCGAGTACCCTCCTTTCCAGGCGGCGATTGCAGCCCATGTGGATGGGGTGATG
AGCGCCCATTTATTGATACCGGCGTTAGACCCAGACTATCCCGCCACCCTATCTCCCAAAATTCTGACGGGAGAGCTTCG
CCAAAAGTTGGGGTTTGAGGGGCTGATCGTCACGGATGCATTGGTGATGGGAGCCATTGCCAATCAATATGGTGCCAATG
AAGCGGCAGTGCTAGCGGTCGCTGCTGGAGCCGATATCCTGATGATGCCTGCGGATCCGCTGGGGGCAATTTCTGCGGTG
TGTGAAGCGGTGGAACGAGGACGGATTCCCTTAGAACAAATTGAAGCGTCGGTGGAGCGGATTTGGCGGGCAAAGCAAAA
AATTACCCGCTATGAAGTGGAGGATACAAGTTATCAACATGCGTGGGAAACCCATACGCCTTTGCAGATCGATTTAGATC
GGTTAGGAACGGCAGAGGCGATCGACGCGACTACCACGATCCTGAAGAGATCGAATGTGGTGCATGGACAGATTACTGCG
ATTCCTGACAATGCCCGAACGCTAATTATTGTGGATGATTTGGTGGATTGTGAGTTTCTTAGTCGCAAGGCTCTAGCGAT
TGATTTACCCCGCAAGTTGGGTTATCAGGTGCAAATTGTGGATGGTAATACGCCTGAGATACCGATGGATAAAGTGGGTC
AGCCAACATTTTTGCAGTTGTTTATTCGCGGTAATCCGTTTAGAGGCAGTGCCCAGTTAAGTCGTCAGGCTGAAGCTTGG
TTTGAGTTTTTGCTGCAATCTGACCAGTTACAGGCTTTAGCGGTTTACGGCAGTCCCTATGCATTAGCTCAGTTTCAAGG
ACAGCTTTCTGCTGAGATTCCTTATGGGTTTAGTTATGGGCAAATGCCTTTGGCGCAAAAACTTGTTCTCAAGCAATTAT
TAGGGCAGTTGGGATAA

Upstream 100 bases:

>100_bases
GCTCCATAAACTCGATCATGAGCGCCAGAATAAGCCTGCTGCCTCAACCGAAAAGCCTCCTGTAGGATCTTTAGACGCTG
ATCTCTAGTTGGATGAACTC

Downstream 100 bases:

>100_bases
AACTTTGAAAAGTTTCTAACAGCTATCACTCCCCAAAATTTAGAGCATCTGATTCGGTTGGATCAACCATGACGGAAGCT
GAGAAATATGAGTAATCTTT

Product: beta-glucosidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 538; Mature: 537

Protein sequence:

>538_residues
MTHLLPEPDSLSLPEQVAQMLVVRASGYLFDHQIQYPSWEPSAEVLRHWLTDLGVGGVILLGGSAGEIACRCQQLQEWSA
IPLLLAADIEEGVGQRFSGATWFPPPLALAGMVQAGAAIEQVQQSAQAMGAWTAQEALAIGLNWVLAPVVDVNNNPQNPV
INVRAFGETPELVSQLSTAFIQGAQPYPVLTTAKHFPGHGDTATDSHLDLPVIPHDCDRIYNTEYPPFQAAIAAHVDGVM
SAHLLIPALDPDYPATLSPKILTGELRQKLGFEGLIVTDALVMGAIANQYGANEAAVLAVAAGADILMMPADPLGAISAV
CEAVERGRIPLEQIEASVERIWRAKQKITRYEVEDTSYQHAWETHTPLQIDLDRLGTAEAIDATTTILKRSNVVHGQITA
IPDNARTLIIVDDLVDCEFLSRKALAIDLPRKLGYQVQIVDGNTPEIPMDKVGQPTFLQLFIRGNPFRGSAQLSRQAEAW
FEFLLQSDQLQALAVYGSPYALAQFQGQLSAEIPYGFSYGQMPLAQKLVLKQLLGQLG

Sequences:

>Translated_538_residues
MTHLLPEPDSLSLPEQVAQMLVVRASGYLFDHQIQYPSWEPSAEVLRHWLTDLGVGGVILLGGSAGEIACRCQQLQEWSA
IPLLLAADIEEGVGQRFSGATWFPPPLALAGMVQAGAAIEQVQQSAQAMGAWTAQEALAIGLNWVLAPVVDVNNNPQNPV
INVRAFGETPELVSQLSTAFIQGAQPYPVLTTAKHFPGHGDTATDSHLDLPVIPHDCDRIYNTEYPPFQAAIAAHVDGVM
SAHLLIPALDPDYPATLSPKILTGELRQKLGFEGLIVTDALVMGAIANQYGANEAAVLAVAAGADILMMPADPLGAISAV
CEAVERGRIPLEQIEASVERIWRAKQKITRYEVEDTSYQHAWETHTPLQIDLDRLGTAEAIDATTTILKRSNVVHGQITA
IPDNARTLIIVDDLVDCEFLSRKALAIDLPRKLGYQVQIVDGNTPEIPMDKVGQPTFLQLFIRGNPFRGSAQLSRQAEAW
FEFLLQSDQLQALAVYGSPYALAQFQGQLSAEIPYGFSYGQMPLAQKLVLKQLLGQLG
>Mature_537_residues
THLLPEPDSLSLPEQVAQMLVVRASGYLFDHQIQYPSWEPSAEVLRHWLTDLGVGGVILLGGSAGEIACRCQQLQEWSAI
PLLLAADIEEGVGQRFSGATWFPPPLALAGMVQAGAAIEQVQQSAQAMGAWTAQEALAIGLNWVLAPVVDVNNNPQNPVI
NVRAFGETPELVSQLSTAFIQGAQPYPVLTTAKHFPGHGDTATDSHLDLPVIPHDCDRIYNTEYPPFQAAIAAHVDGVMS
AHLLIPALDPDYPATLSPKILTGELRQKLGFEGLIVTDALVMGAIANQYGANEAAVLAVAAGADILMMPADPLGAISAVC
EAVERGRIPLEQIEASVERIWRAKQKITRYEVEDTSYQHAWETHTPLQIDLDRLGTAEAIDATTTILKRSNVVHGQITAI
PDNARTLIIVDDLVDCEFLSRKALAIDLPRKLGYQVQIVDGNTPEIPMDKVGQPTFLQLFIRGNPFRGSAQLSRQAEAWF
EFLLQSDQLQALAVYGSPYALAQFQGQLSAEIPYGFSYGQMPLAQKLVLKQLLGQLG

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=328, Percent_Identity=30.4878048780488, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788453, Length=286, Percent_Identity=29.7202797202797, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.21

Molecular weight: Translated: 58318; Mature: 58187

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHLLPEPDSLSLPEQVAQMLVVRASGYLFDHQIQYPSWEPSAEVLRHWLTDLGVGGVIL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
LGGSAGEIACRCQQLQEWSAIPLLLAADIEEGVGQRFSGATWFPPPLALAGMVQAGAAIE
ECCCCCHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
QVQQSAQAMGAWTAQEALAIGLNWVLAPVVDVNNNPQNPVINVRAFGETPELVSQLSTAF
HHHHHHHHHHCHHHHHHHHHHHHEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHH
IQGAQPYPVLTTAKHFPGHGDTATDSHLDLPVIPHDCDRIYNTEYPPFQAAIAAHVDGVM
HCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
SAHLLIPALDPDYPATLSPKILTGELRQKLGFEGLIVTDALVMGAIANQYGANEAAVLAV
HHEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
AAGADILMMPADPLGAISAVCEAVERGRIPLEQIEASVERIWRAKQKITRYEVEDTSYQH
ECCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
AWETHTPLQIDLDRLGTAEAIDATTTILKRSNVVHGQITAIPDNARTLIIVDDLVDCEFL
CCCCCCCEEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCHHHH
SRKALAIDLPRKLGYQVQIVDGNTPEIPMDKVGQPTFLQLFIRGNPFRGSAQLSRQAEAW
CCCCEEEECHHHCCCEEEEECCCCCCCCHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHH
FEFLLQSDQLQALAVYGSPYALAQFQGQLSAEIPYGFSYGQMPLAQKLVLKQLLGQLG
HHHHHCCCCEEEEEEECCCCEEHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
THLLPEPDSLSLPEQVAQMLVVRASGYLFDHQIQYPSWEPSAEVLRHWLTDLGVGGVIL
CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
LGGSAGEIACRCQQLQEWSAIPLLLAADIEEGVGQRFSGATWFPPPLALAGMVQAGAAIE
ECCCCCHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
QVQQSAQAMGAWTAQEALAIGLNWVLAPVVDVNNNPQNPVINVRAFGETPELVSQLSTAF
HHHHHHHHHHCHHHHHHHHHHHHEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHH
IQGAQPYPVLTTAKHFPGHGDTATDSHLDLPVIPHDCDRIYNTEYPPFQAAIAAHVDGVM
HCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
SAHLLIPALDPDYPATLSPKILTGELRQKLGFEGLIVTDALVMGAIANQYGANEAAVLAV
HHEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
AAGADILMMPADPLGAISAVCEAVERGRIPLEQIEASVERIWRAKQKITRYEVEDTSYQH
ECCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
AWETHTPLQIDLDRLGTAEAIDATTTILKRSNVVHGQITAIPDNARTLIIVDDLVDCEFL
CCCCCCCEEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCHHHH
SRKALAIDLPRKLGYQVQIVDGNTPEIPMDKVGQPTFLQLFIRGNPFRGSAQLSRQAEAW
CCCCEEEECHHHCCCEEEEECCCCCCCCHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHH
FEFLLQSDQLQALAVYGSPYALAQFQGQLSAEIPYGFSYGQMPLAQKLVLKQLLGQLG
HHHHHCCCCEEEEEEECCCCEEHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]