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The map label for this gene is 158336186

Identifier: 158336186

GI number: 158336186

Start: 3071978

End: 3073132

Strand: Reverse

Name: 158336186

Synonym: AM1_3048

Alternate gene names: NA

Gene position: 3073132-3071978 (Counterclockwise)

Preceding gene: 158336187

Following gene: 158336185

Centisome position: 47.25

GC content: 52.73

Gene sequence:

>1155_bases
ATGTTCACCCTCACTCCTTCGCCATTGTCGATGCCCCTACTTAAGCCCCTAGCAGAACTGAGTCACCATCATCAGCTATC
GGATTACATTACTGCGATCGCATGGTCGCCCGTTGGCAATACCCTGGCGGTGACGTCGGGGGCAGGAGAGGTTCTTTTGC
TGCACAACGATAGCGATCTATTGCTTCAAGACGCCAATGGCCTATCCATCGATGACATCGCCTTCTCCGCTGATGGCCAG
TGGTTAGCAGCCGGTGGCCAAGCAGGGCAGATTAACCTCTGGCCAATGACGATAGAGATGGCGACAGAGAAAGCCCCAGC
CACAAAGACCCTAACGGGAGACTCTGCCTGGATTGACCGGCTCCAGTGGCATCCCCACCACAACTTACTCGCCTTCAATC
GAGGGAAGACGGTGCAAATTTGGGATGCTGATAGAGCTGAAATGCTGACTACTCTTGAACTCGCTGCCCAAGTTCAAGAC
ATTGGCTGGTCGCCTGATGGACAACATCTTGCGGTGGCAGCCAATACCCTAGTCCACATTTGGCGGATTCCACAGTGGGA
TCACCCTCTCCATCAATGGGAACTGATGGCTCCAGCAATGTCTTTATCCTGGTCGCCGGAAGGGGCTTATCTCGCAACAG
CAAATCAAGACTTAAGTGTCAGTATTCTAACGTGGGCCAAGGTGTCCTTTATCAATCAGGCTTCCACTGCGGAAGATGAT
TTACCAACCCTCATTCGGGGCTTCCCTGGTAAAATCCGCCAACTGGCTTGGGCTGATGTACCTGATGCAGATCGCTCCCC
TATTTTAGCGGCTGCAACCCGTGAACTGGTAGCGATGTCGATGCTGGTACCCGACGAAGGCTGGCAAAGTTGGATATTAG
ATAGCCACACTGCAAACGTCTTAGATATTGCCTTTCAGCCCCAAACAGGTCTGCTTGCCTCTCTATCTGAAGATGGTTGG
GTCATTTTGTGGAAAGCAGCGATTGAGGCTGCTCAGATGCTCGATGGAGCGATGGACGGATTTTCATGTTTGGCTTGGCA
CCCCACTGGACAGTGTCTCGCCGCAGGGGGGCAACGGGGTGAAGTTTTAGTTTGGTCCGTTGACTTGGGTTATGAAGGTT
TGGGTTATGAAAACGACGAATGGGGGCTGGACTGA

Upstream 100 bases:

>100_bases
GCGTCTTGCGTCATCATTCTGGTCCTAAACCAAAGCCTGTCGAGTATCCCTTCAGACGTCGTTAACGGCGGAATGATTGA
TGAAGTAACCGCTTGACAAG

Downstream 100 bases:

>100_bases
GCATGACCCTGTTAGATTGGCCTATTTTTGGTATCCATATTAGCTGTCCGATTTGCCGCCGACAGAGTCCAGCCCTGATG
CTAACCGAGGCGTATCTTTG

Product: WD repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MFTLTPSPLSMPLLKPLAELSHHHQLSDYITAIAWSPVGNTLAVTSGAGEVLLLHNDSDLLLQDANGLSIDDIAFSADGQ
WLAAGGQAGQINLWPMTIEMATEKAPATKTLTGDSAWIDRLQWHPHHNLLAFNRGKTVQIWDADRAEMLTTLELAAQVQD
IGWSPDGQHLAVAANTLVHIWRIPQWDHPLHQWELMAPAMSLSWSPEGAYLATANQDLSVSILTWAKVSFINQASTAEDD
LPTLIRGFPGKIRQLAWADVPDADRSPILAAATRELVAMSMLVPDEGWQSWILDSHTANVLDIAFQPQTGLLASLSEDGW
VILWKAAIEAAQMLDGAMDGFSCLAWHPTGQCLAAGGQRGEVLVWSVDLGYEGLGYENDEWGLD

Sequences:

>Translated_384_residues
MFTLTPSPLSMPLLKPLAELSHHHQLSDYITAIAWSPVGNTLAVTSGAGEVLLLHNDSDLLLQDANGLSIDDIAFSADGQ
WLAAGGQAGQINLWPMTIEMATEKAPATKTLTGDSAWIDRLQWHPHHNLLAFNRGKTVQIWDADRAEMLTTLELAAQVQD
IGWSPDGQHLAVAANTLVHIWRIPQWDHPLHQWELMAPAMSLSWSPEGAYLATANQDLSVSILTWAKVSFINQASTAEDD
LPTLIRGFPGKIRQLAWADVPDADRSPILAAATRELVAMSMLVPDEGWQSWILDSHTANVLDIAFQPQTGLLASLSEDGW
VILWKAAIEAAQMLDGAMDGFSCLAWHPTGQCLAAGGQRGEVLVWSVDLGYEGLGYENDEWGLD
>Mature_384_residues
MFTLTPSPLSMPLLKPLAELSHHHQLSDYITAIAWSPVGNTLAVTSGAGEVLLLHNDSDLLLQDANGLSIDDIAFSADGQ
WLAAGGQAGQINLWPMTIEMATEKAPATKTLTGDSAWIDRLQWHPHHNLLAFNRGKTVQIWDADRAEMLTTLELAAQVQD
IGWSPDGQHLAVAANTLVHIWRIPQWDHPLHQWELMAPAMSLSWSPEGAYLATANQDLSVSILTWAKVSFINQASTAEDD
LPTLIRGFPGKIRQLAWADVPDADRSPILAAATRELVAMSMLVPDEGWQSWILDSHTANVLDIAFQPQTGLLASLSEDGW
VILWKAAIEAAQMLDGAMDGFSCLAWHPTGQCLAAGGQRGEVLVWSVDLGYEGLGYENDEWGLD

Specific function: Unknown

COG id: COG2319

COG function: function code R; FOG: WD40 repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 15 WD repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000767
- InterPro:   IPR020472
- InterPro:   IPR002182
- InterPro:   IPR015943
- InterPro:   IPR001680
- InterPro:   IPR011046
- InterPro:   IPR019782
- InterPro:   IPR019775
- InterPro:   IPR017986
- InterPro:   IPR019781 [H]

Pfam domain/function: PF00931 NB-ARC; PF00400 WD40 [H]

EC number: NA

Molecular weight: Translated: 41870; Mature: 41870

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS00290 IG_MHC ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTLTPSPLSMPLLKPLAELSHHHQLSDYITAIAWSPVGNTLAVTSGAGEVLLLHNDSDL
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCCCCEEEEECCCCE
LLQDANGLSIDDIAFSADGQWLAAGGQAGQINLWPMTIEMATEKAPATKTLTGDSAWIDR
EEECCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEEEEECCCCCCCEEECCCHHHHHH
LQWHPHHNLLAFNRGKTVQIWDADRAEMLTTLELAAQVQDIGWSPDGQHLAVAANTLVHI
EEECCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECEEEEE
WRIPQWDHPLHQWELMAPAMSLSWSPEGAYLATANQDLSVSILTWAKVSFINQASTAEDD
EECCCCCCCHHHHHHHCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEHHHHCCCCCCCCC
LPTLIRGFPGKIRQLAWADVPDADRSPILAAATRELVAMSMLVPDEGWQSWILDSHTANV
HHHHHHCCCCHHHHEEECCCCCCCCCCCHHHHHHHHHHHHEECCCCCCHHHEECCCCCCE
LDIAFQPQTGLLASLSEDGWVILWKAAIEAAQMLDGAMDGFSCLAWHPTGQCLAAGGQRG
EEEEECCCCCCEEEECCCCEEEEEHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCCCCC
EVLVWSVDLGYEGLGYENDEWGLD
CEEEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFTLTPSPLSMPLLKPLAELSHHHQLSDYITAIAWSPVGNTLAVTSGAGEVLLLHNDSDL
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCCCCEEEEECCCCE
LLQDANGLSIDDIAFSADGQWLAAGGQAGQINLWPMTIEMATEKAPATKTLTGDSAWIDR
EEECCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEEEEECCCCCCCEEECCCHHHHHH
LQWHPHHNLLAFNRGKTVQIWDADRAEMLTTLELAAQVQDIGWSPDGQHLAVAANTLVHI
EEECCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECEEEEE
WRIPQWDHPLHQWELMAPAMSLSWSPEGAYLATANQDLSVSILTWAKVSFINQASTAEDD
EECCCCCCCHHHHHHHCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEHHHHCCCCCCCCC
LPTLIRGFPGKIRQLAWADVPDADRSPILAAATRELVAMSMLVPDEGWQSWILDSHTANV
HHHHHHCCCCHHHHEEECCCCCCCCCCCHHHHHHHHHHHHEECCCCCCHHHEECCCCCCE
LDIAFQPQTGLLASLSEDGWVILWKAAIEAAQMLDGAMDGFSCLAWHPTGQCLAAGGQRG
EEEEECCCCCCEEEECCCCEEEEEHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCCCCC
EVLVWSVDLGYEGLGYENDEWGLD
CEEEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]