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The map label for this gene is yciR [C]

Identifier: 158336134

GI number: 158336134

Start: 3024372

End: 3026117

Strand: Reverse

Name: yciR [C]

Synonym: AM1_2996

Alternate gene names: 158336134

Gene position: 3026117-3024372 (Counterclockwise)

Preceding gene: 158336135

Following gene: 158336133

Centisome position: 46.53

GC content: 46.22

Gene sequence:

>1746_bases
ATGACGGAATCGCTTCCTGCAAATGTACTCTCTGCTTTAGATATTTTAATTTTAGAGCGGGTTAATGAGCATTCCTTAAC
CATTGTAGGAACAGCGCCCTCCTGGTTCACTAAACTCTATCCCCAGGTCCAACTCACCTTAGATGTGGCTTGGATCGAAA
GAAAATTGCCTTTTCTGGCTAACTTTCTGGTGGATGCGATGGAGTTTTGGCATGACAATCAGCCAGGTCAGTATAAGTCG
GGCATGTGGTGTGAAACCGATCATCGTGACCAAGAGATTCATTTGGAGGCGGCAGCCCTCAATTTAGGATCTCAGAAAAT
CCTCCTGATTAAGGCCTCAGAGGGGGAATATATTGAACTCCTCTCCTTTATTCAAAAAGCGCGGGAAAGCACATTAGATT
TTATTGAAGAGCGGAAACAAACGAGCGAAAGCATTCTCAAGACGACGTTTTATGATGCCTTGACGGGGCTGCCGAATCAA
ACCTATTTCCTGATTCAGCTGGCCCATGCTTTTGAACGGTTTAAGCGCAAAAAGAGCTATCACTTTGCCATTTTGATCGT
CAATATTGACCGCTTTCAAAGTATTAATGATAGTTTTGGCCGTTTGGCAGGGGATCAGCTCCTGATTGCCATTGCTTGGC
GCTTGAAAAATTGCTTGGATGAATTTGATATCTTCGCCCGTTTGAGTGGAGATGAATTTATCATTCTGTTGGATGAAATT
GACGCGACGAGCACAGCTATCTTAGCCGCCAACCAAATTTCGGCAGAGTTCCAAACCCCATTTCGATTGAGTGGTCAAGA
GTTATTTATAACGGCCAGTGTCGGGATTGCTTTAACCTTGATGGAGTATGACCGGGCTGAAGATTTACTTCGAGATGCCA
ATACAGCGGTCAGTTATGCCAAAGGACTGGGGCGAGCCAATTATGTGGTATTTGATCCCACCATGCATGCGCGAGCGGTA
CGACTGCTGCAGCTTGAAAATGATTTGAAGCGAGCGCTGCGTGAGCAGGAACTGAATTTATTCTTTCAGCCGATTGTTTG
TTTGGCCGATCAAAGAATTATTGGCTTTGAGGCCTTAGTTCGATGGATGCATCCCAGGCTAGGCATGGTGTCTCCTCTAG
AGTTTATTCCAATTGCCGAAGAAACGGGCCTGATTTTCGAGATCGATCAGTGGATGTTGAAAGAAGCCTGTTTTCGCATT
CAGCAGTGGCGACGATTTACGGAAGAACCCCTCTCGATTAGCGTCAATTTTTCGGCGAAGCAGTTTGATCAACCCGATTT
AGTGTCGCAAGTCCGGCAAGTGTTGCTGGAAACCCGCATTTCTCCGCAACAGCTCATGATTGAAATTACGGAGAGTGTGT
TGTTTAGTCGAGACCAAGCGGCGATCGATACGCTTCATCAGCTCAAAAATATGGGGGTTAGCCTTTGTATCGATGATTTT
GGGACAGGCTATGCATCGTTGCAATATTTGCAGCAATTACCGGTGGATACGTTAAAGATTGATCGGTCCTTTATTAAACG
GATGGATGTGGATAATCTCGATCTAGTGCGCTCTATCATTGAGTTAGCCCATGATCTGGGGCTCAGTGTGACGGCTGAAG
GTGTTGAAACTCCGGTACAGCGGCGCTTTTTGCTAGATATGGGCTGCCAAGAAGCGCAAGGTCATTTGTTCTCGAAACCG
GTCGATGGACAAATGGCGGTGGCGCTGCTGCAGGAAAAGATGACGAACGGTCTCAAAGATTGGTGA

Upstream 100 bases:

>100_bases
TTGATGGGCTAGATAAAAGGCAGAAGTCTTTTCAACCCACGTCTCTTGCTGGCAGTTCTCTGACTAACAGCCCGAGCTTA
TATTCTTATCACCCAATGCA

Downstream 100 bases:

>100_bases
AACAGTTGGCAAAGACGATAGTTCTCGCTACGCTCTTAGACAGCGGTCGATCATCTTAATACCTTGTAAATAACCTGTTA
TGACACCAGTCGAGGGGCGC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 581; Mature: 580

Protein sequence:

>581_residues
MTESLPANVLSALDILILERVNEHSLTIVGTAPSWFTKLYPQVQLTLDVAWIERKLPFLANFLVDAMEFWHDNQPGQYKS
GMWCETDHRDQEIHLEAAALNLGSQKILLIKASEGEYIELLSFIQKARESTLDFIEERKQTSESILKTTFYDALTGLPNQ
TYFLIQLAHAFERFKRKKSYHFAILIVNIDRFQSINDSFGRLAGDQLLIAIAWRLKNCLDEFDIFARLSGDEFIILLDEI
DATSTAILAANQISAEFQTPFRLSGQELFITASVGIALTLMEYDRAEDLLRDANTAVSYAKGLGRANYVVFDPTMHARAV
RLLQLENDLKRALREQELNLFFQPIVCLADQRIIGFEALVRWMHPRLGMVSPLEFIPIAEETGLIFEIDQWMLKEACFRI
QQWRRFTEEPLSISVNFSAKQFDQPDLVSQVRQVLLETRISPQQLMIEITESVLFSRDQAAIDTLHQLKNMGVSLCIDDF
GTGYASLQYLQQLPVDTLKIDRSFIKRMDVDNLDLVRSIIELAHDLGLSVTAEGVETPVQRRFLLDMGCQEAQGHLFSKP
VDGQMAVALLQEKMTNGLKDW

Sequences:

>Translated_581_residues
MTESLPANVLSALDILILERVNEHSLTIVGTAPSWFTKLYPQVQLTLDVAWIERKLPFLANFLVDAMEFWHDNQPGQYKS
GMWCETDHRDQEIHLEAAALNLGSQKILLIKASEGEYIELLSFIQKARESTLDFIEERKQTSESILKTTFYDALTGLPNQ
TYFLIQLAHAFERFKRKKSYHFAILIVNIDRFQSINDSFGRLAGDQLLIAIAWRLKNCLDEFDIFARLSGDEFIILLDEI
DATSTAILAANQISAEFQTPFRLSGQELFITASVGIALTLMEYDRAEDLLRDANTAVSYAKGLGRANYVVFDPTMHARAV
RLLQLENDLKRALREQELNLFFQPIVCLADQRIIGFEALVRWMHPRLGMVSPLEFIPIAEETGLIFEIDQWMLKEACFRI
QQWRRFTEEPLSISVNFSAKQFDQPDLVSQVRQVLLETRISPQQLMIEITESVLFSRDQAAIDTLHQLKNMGVSLCIDDF
GTGYASLQYLQQLPVDTLKIDRSFIKRMDVDNLDLVRSIIELAHDLGLSVTAEGVETPVQRRFLLDMGCQEAQGHLFSKP
VDGQMAVALLQEKMTNGLKDW
>Mature_580_residues
TESLPANVLSALDILILERVNEHSLTIVGTAPSWFTKLYPQVQLTLDVAWIERKLPFLANFLVDAMEFWHDNQPGQYKSG
MWCETDHRDQEIHLEAAALNLGSQKILLIKASEGEYIELLSFIQKARESTLDFIEERKQTSESILKTTFYDALTGLPNQT
YFLIQLAHAFERFKRKKSYHFAILIVNIDRFQSINDSFGRLAGDQLLIAIAWRLKNCLDEFDIFARLSGDEFIILLDEID
ATSTAILAANQISAEFQTPFRLSGQELFITASVGIALTLMEYDRAEDLLRDANTAVSYAKGLGRANYVVFDPTMHARAVR
LLQLENDLKRALREQELNLFFQPIVCLADQRIIGFEALVRWMHPRLGMVSPLEFIPIAEETGLIFEIDQWMLKEACFRIQ
QWRRFTEEPLSISVNFSAKQFDQPDLVSQVRQVLLETRISPQQLMIEITESVLFSRDQAAIDTLHQLKNMGVSLCIDDFG
TGYASLQYLQQLPVDTLKIDRSFIKRMDVDNLDLVRSIIELAHDLGLSVTAEGVETPVQRRFLLDMGCQEAQGHLFSKPV
DGQMAVALLQEKMTNGLKDW

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=435, Percent_Identity=34.2528735632184, Blast_Score=261, Evalue=1e-70,
Organism=Escherichia coli, GI87081921, Length=466, Percent_Identity=31.1158798283262, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI226510982, Length=415, Percent_Identity=30.8433734939759, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=34.5238095238095, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1786507, Length=286, Percent_Identity=31.4685314685315, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=33.6134453781513, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI1787055, Length=236, Percent_Identity=33.8983050847458, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=33.3333333333333, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=35.7723577235772, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1788502, Length=236, Percent_Identity=28.8135593220339, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=236, Percent_Identity=34.3220338983051, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI87082096, Length=246, Percent_Identity=30.8943089430894, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788381, Length=438, Percent_Identity=24.6575342465753, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1787410, Length=235, Percent_Identity=28.5106382978723, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=186, Percent_Identity=26.3440860215054, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1786584, Length=154, Percent_Identity=29.2207792207792, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=178, Percent_Identity=32.5842696629214, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=29.8850574712644, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787802, Length=153, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1789650, Length=456, Percent_Identity=22.5877192982456, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=30.188679245283, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 66352; Mature: 66221

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESLPANVLSALDILILERVNEHSLTIVGTAPSWFTKLYPQVQLTLDVAWIERKLPFLA
CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCEEEEEEHHHHHHHHHHHH
NFLVDAMEFWHDNQPGQYKSGMWCETDHRDQEIHLEAAALNLGSQKILLIKASEGEYIEL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCHHHH
LSFIQKARESTLDFIEERKQTSESILKTTFYDALTGLPNQTYFLIQLAHAFERFKRKKSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
HFAILIVNIDRFQSINDSFGRLAGDQLLIAIAWRLKNCLDEFDIFARLSGDEFIILLDEI
EEEEEEEEHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECC
DATSTAILAANQISAEFQTPFRLSGQELFITASVGIALTLMEYDRAEDLLRDANTAVSYA
CCCCHHEEEHHHHCCCCCCCCEECCCEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHH
KGLGRANYVVFDPTMHARAVRLLQLENDLKRALREQELNLFFQPIVCLADQRIIGFEALV
HCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RWMHPRLGMVSPLEFIPIAEETGLIFEIDQWMLKEACFRIQQWRRFTEEPLSISVNFSAK
HHHCCCCCCCCCCCEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
QFDQPDLVSQVRQVLLETRISPQQLMIEITESVLFSRDQAAIDTLHQLKNMGVSLCIDDF
HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCC
GTGYASLQYLQQLPVDTLKIDRSFIKRMDVDNLDLVRSIIELAHDLGLSVTAEGVETPVQ
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
RRFLLDMGCQEAQGHLFSKPVDGQMAVALLQEKMTNGLKDW
HHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TESLPANVLSALDILILERVNEHSLTIVGTAPSWFTKLYPQVQLTLDVAWIERKLPFLA
CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCEEEEEEHHHHHHHHHHHH
NFLVDAMEFWHDNQPGQYKSGMWCETDHRDQEIHLEAAALNLGSQKILLIKASEGEYIEL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCHHHH
LSFIQKARESTLDFIEERKQTSESILKTTFYDALTGLPNQTYFLIQLAHAFERFKRKKSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
HFAILIVNIDRFQSINDSFGRLAGDQLLIAIAWRLKNCLDEFDIFARLSGDEFIILLDEI
EEEEEEEEHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECC
DATSTAILAANQISAEFQTPFRLSGQELFITASVGIALTLMEYDRAEDLLRDANTAVSYA
CCCCHHEEEHHHHCCCCCCCCEECCCEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHH
KGLGRANYVVFDPTMHARAVRLLQLENDLKRALREQELNLFFQPIVCLADQRIIGFEALV
HCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RWMHPRLGMVSPLEFIPIAEETGLIFEIDQWMLKEACFRIQQWRRFTEEPLSISVNFSAK
HHHCCCCCCCCCCCEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
QFDQPDLVSQVRQVLLETRISPQQLMIEITESVLFSRDQAAIDTLHQLKNMGVSLCIDDF
HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCC
GTGYASLQYLQQLPVDTLKIDRSFIKRMDVDNLDLVRSIIELAHDLGLSVTAEGVETPVQ
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
RRFLLDMGCQEAQGHLFSKPVDGQMAVALLQEKMTNGLKDW
HHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]