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The map label for this gene is ycf3

Identifier: 158335969

GI number: 158335969

Start: 2869975

End: 2870475

Strand: Direct

Name: ycf3

Synonym: AM1_2827

Alternate gene names: 158335969

Gene position: 2869975-2870475 (Clockwise)

Preceding gene: 158335968

Following gene: 158335971

Centisome position: 44.13

GC content: 45.71

Gene sequence:

>501_bases
ATGCCTAGCGACAATTTTATAGATAAAGCTTTTTCAGCAATGTCCGATGTCGTCATGAAAGTGATTCCTACGGATCAAAA
GTCCAAAGATGCTTTCAAATACTATCGGTCCGGGATGGCTGCTCAGGTAGATGGCAACTATGCAAAAGCACTGGGCAACT
ATACCGAAGCACTGGCTTTAGAAGAAGATCCCTTCGACAAAAGCTATATCCTCTACAATATGGGCTTGATCTTTGCCAAT
AACGGCGATCATGAAAAAGCCTTGGATTACTACCATCAATCGTTAGAGTTAAATCCCAATTTAGTCCAAGCGTTGTATAA
CACTGGGGTCATCCTCCATTACAAGGGCGAACAGGCTGAAGAAGCCGCTGAATTGGATGAAGCCGAACGCTTTTTTGACC
TAGCGGCCGACTTCTGGAAGCGGGCTATTAAAATTGCCCCTAACAACTATAGTGAAGTGCAAAACTGGCTGAAGACCACG
GGACGCGTCGGCGTCGGCTAG

Upstream 100 bases:

>100_bases
CGATTCATCCCAAAGACTACTGCTAAACTAAAGTACAAACGCTTTAATAACGCGATATTCACATACGCCTGATTTACGTC
TTACAACGGTTGAAGTCATT

Downstream 100 bases:

>100_bases
CCCTAGGAAAGAGGTCAGTCCTTTAAACCGCTTTCCTCTTTTCCTCACCCTGACCTCCAAAGACAAGCATCCGTTATCGT
CCCCCTAGAAATTTCTAGGA

Product: photosystem I assembly protein Ycf3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MPSDNFIDKAFSAMSDVVMKVIPTDQKSKDAFKYYRSGMAAQVDGNYAKALGNYTEALALEEDPFDKSYILYNMGLIFAN
NGDHEKALDYYHQSLELNPNLVQALYNTGVILHYKGEQAEEAAELDEAERFFDLAADFWKRAIKIAPNNYSEVQNWLKTT
GRVGVG

Sequences:

>Translated_166_residues
MPSDNFIDKAFSAMSDVVMKVIPTDQKSKDAFKYYRSGMAAQVDGNYAKALGNYTEALALEEDPFDKSYILYNMGLIFAN
NGDHEKALDYYHQSLELNPNLVQALYNTGVILHYKGEQAEEAAELDEAERFFDLAADFWKRAIKIAPNNYSEVQNWLKTT
GRVGVG
>Mature_165_residues
PSDNFIDKAFSAMSDVVMKVIPTDQKSKDAFKYYRSGMAAQVDGNYAKALGNYTEALALEEDPFDKSYILYNMGLIFANN
GDHEKALDYYHQSLELNPNLVQALYNTGVILHYKGEQAEEAAELDEAERFFDLAADFWKRAIKIAPNNYSEVQNWLKTTG
RVGVG

Specific function: Seems to be required for the assembly of the photosystem I complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF3_ACAM1 (B0CA92)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001517143.1
- ProteinModelPortal:   B0CA92
- SMR:   B0CA92
- GeneID:   5681635
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_2827
- HOGENOM:   HBG285147
- OMA:   NWLKTTG
- ProtClustDB:   PRK02603
- BioCyc:   AMAR329726:AM1_2827-MONOMER
- GO:   GO:0005488
- GO:   GO:0015979
- HAMAP:   MF_00439
- InterPro:   IPR022818
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- Gene3D:   G3DSA:1.25.40.10

Pfam domain/function: PF00515 TPR_1

EC number: NA

Molecular weight: Translated: 18725; Mature: 18594

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSDNFIDKAFSAMSDVVMKVIPTDQKSKDAFKYYRSGMAAQVDGNYAKALGNYTEALAL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCC
EEDPFDKSYILYNMGLIFANNGDHEKALDYYHQSLELNPNLVQALYNTGVILHYKGEQAE
CCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCHH
EAAELDEAERFFDLAADFWKRAIKIAPNNYSEVQNWLKTTGRVGVG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PSDNFIDKAFSAMSDVVMKVIPTDQKSKDAFKYYRSGMAAQVDGNYAKALGNYTEALAL
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCC
EEDPFDKSYILYNMGLIFANNGDHEKALDYYHQSLELNPNLVQALYNTGVILHYKGEQAE
CCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCHH
EAAELDEAERFFDLAADFWKRAIKIAPNNYSEVQNWLKTTGRVGVG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA