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The map label for this gene is ycjD [H]

Identifier: 158335868

GI number: 158335868

Start: 2761388

End: 2761795

Strand: Reverse

Name: ycjD [H]

Synonym: AM1_2726

Alternate gene names: 158335868

Gene position: 2761795-2761388 (Counterclockwise)

Preceding gene: 158335870

Following gene: 158335867

Centisome position: 42.46

GC content: 51.47

Gene sequence:

>408_bases
ATGCGAGAGAAGCAGATGCAGCGCCACCGTATTCGCGGCATGACCCCAGCCGTCGTTGCCGCCGCGCGAAGACTCAGACT
CAATCTGACGCCTGCCGAACAAAAGCTGTGGAAAGCACTGCAAAAACGTCAACTCAGCGGCCTGAAATTCCGCTGTCAAC
ACGCCATTGGTTCGTTCATTGTCGATTTTTACTGTCCCCAATGCCGATTAGTGATTGAGCTAGACGGCGACATCCACAAT
CAGCAGGTGGAGTATGATGAAGCCCGTACCGAGCAATTCAACCAGCTTGGTTTCCGAGTGATCCGATTCCAGAACTCAGA
CGTTATGCACCACCTAGATCAGGTACTTCAGCAAATCCGATATGCGAGTGAGCAAAGCCTTGATCGACAATCAAAGTCTC
CAGAATGA

Upstream 100 bases:

>100_bases
AGCCCAATTTAACTCTGCATTCGCCCCCTGAATCCCCCATTCTGGGGGACCTTGAGATTTATGATTCTCCGAGATGGGAG
ATAGGGTTAGGGGTAACACG

Downstream 100 bases:

>100_bases
GGGATTTGAGGTGATTATGTCTATAGCTTTCTCCATTGCACTGGTCCCCTAAATCCCCTGCCAGTGGGGGACTTCACCTG
TTTTTTTCACAGATATTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MREKQMQRHRIRGMTPAVVAAARRLRLNLTPAEQKLWKALQKRQLSGLKFRCQHAIGSFIVDFYCPQCRLVIELDGDIHN
QQVEYDEARTEQFNQLGFRVIRFQNSDVMHHLDQVLQQIRYASEQSLDRQSKSPE

Sequences:

>Translated_135_residues
MREKQMQRHRIRGMTPAVVAAARRLRLNLTPAEQKLWKALQKRQLSGLKFRCQHAIGSFIVDFYCPQCRLVIELDGDIHN
QQVEYDEARTEQFNQLGFRVIRFQNSDVMHHLDQVLQQIRYASEQSLDRQSKSPE
>Mature_135_residues
MREKQMQRHRIRGMTPAVVAAARRLRLNLTPAEQKLWKALQKRQLSGLKFRCQHAIGSFIVDFYCPQCRLVIELDGDIHN
QQVEYDEARTEQFNQLGFRVIRFQNSDVMHHLDQVLQQIRYASEQSLDRQSKSPE

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=121, Percent_Identity=42.9752066115703, Blast_Score=99, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 15965; Mature: 15965

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREKQMQRHRIRGMTPAVVAAARRLRLNLTPAEQKLWKALQKRQLSGLKFRCQHAIGSFI
CCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VDFYCPQCRLVIELDGDIHNQQVEYDEARTEQFNQLGFRVIRFQNSDVMHHLDQVLQQIR
HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHH
YASEQSLDRQSKSPE
HHHHHHHHHCCCCCC
>Mature Secondary Structure
MREKQMQRHRIRGMTPAVVAAARRLRLNLTPAEQKLWKALQKRQLSGLKFRCQHAIGSFI
CCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VDFYCPQCRLVIELDGDIHNQQVEYDEARTEQFNQLGFRVIRFQNSDVMHHLDQVLQQIR
HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHH
YASEQSLDRQSKSPE
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]