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The map label for this gene is ycdC [C]

Identifier: 158335820

GI number: 158335820

Start: 2711370

End: 2711777

Strand: Reverse

Name: ycdC [C]

Synonym: AM1_2673

Alternate gene names: 158335820

Gene position: 2711777-2711370 (Counterclockwise)

Preceding gene: 158335823

Following gene: 158335819

Centisome position: 41.7

GC content: 46.32

Gene sequence:

>408_bases
GTGAAACTCACTGAACGAAAACGAGAGAGCATTATTGAGGCAGCGATAGAGGAATTCCGAGAGCAGGGATTTCTGGGCGC
TAAAACCACCCGAATTGCAAAACTTGCAGGGGTATCGAGCCGCACTCTATACAATCACTTTGAGACTAAAGAAGCTCTGT
TTGACGTTGTTTCTGAAATTATGCTCGCGCGCAGCAATGTCATGTCGCCAGTGTCGTACGACCCGTCTCATGGATTGGAA
GAACAATTGATTGATGCACTAGAAAAATATATCGGTGTCATTACCAATGGCGATGCTATTGGATTGCAACGTATTGTGAT
TTCCGAGTTCCTGCGGGACTTAGAGCGTTCTCGCACTATTTTTTGCGAAAGCCGCTACGCACGATTACCCAGTGACGAAG
CTCATTAG

Upstream 100 bases:

>100_bases
TTTGGGTTAAAAAGTAAACTACACTATTTACTTTAGTCTCAGTTCTCTAAAAAGTAAACAACAAATTTTACTTTTTTGAT
TTGCTAAGGTAAGAAACCAC

Downstream 100 bases:

>100_bases
TGAGGCCATGGATTCAGGTGCGCTTAGGAAAGCTGATCCTGAGTATGCGGCCAATCAACTGTTGGGTTTGGTCAAAACAT
TTTTCTTTTGGCCGGAGTTC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; TetR Family Regulatory Protein

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKLTERKRESIIEAAIEEFREQGFLGAKTTRIAKLAGVSSRTLYNHFETKEALFDVVSEIMLARSNVMSPVSYDPSHGLE
EQLIDALEKYIGVITNGDAIGLQRIVISEFLRDLERSRTIFCESRYARLPSDEAH

Sequences:

>Translated_135_residues
MKLTERKRESIIEAAIEEFREQGFLGAKTTRIAKLAGVSSRTLYNHFETKEALFDVVSEIMLARSNVMSPVSYDPSHGLE
EQLIDALEKYIGVITNGDAIGLQRIVISEFLRDLERSRTIFCESRYARLPSDEAH
>Mature_135_residues
MKLTERKRESIIEAAIEEFREQGFLGAKTTRIAKLAGVSSRTLYNHFETKEALFDVVSEIMLARSNVMSPVSYDPSHGLE
EQLIDALEKYIGVITNGDAIGLQRIVISEFLRDLERSRTIFCESRYARLPSDEAH

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15337; Mature: 15337

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTERKRESIIEAAIEEFREQGFLGAKTTRIAKLAGVSSRTLYNHFETKEALFDVVSEI
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
MLARSNVMSPVSYDPSHGLEEQLIDALEKYIGVITNGDAIGLQRIVISEFLRDLERSRTI
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FCESRYARLPSDEAH
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MKLTERKRESIIEAAIEEFREQGFLGAKTTRIAKLAGVSSRTLYNHFETKEALFDVVSEI
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
MLARSNVMSPVSYDPSHGLEEQLIDALEKYIGVITNGDAIGLQRIVISEFLRDLERSRTI
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FCESRYARLPSDEAH
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA