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The map label for this gene is ychF [H]

Identifier: 158335782

GI number: 158335782

Start: 2670887

End: 2671978

Strand: Reverse

Name: ychF [H]

Synonym: AM1_2633

Alternate gene names: 158335782

Gene position: 2671978-2670887 (Counterclockwise)

Preceding gene: 158335790

Following gene: 158335781

Centisome position: 41.08

GC content: 46.06

Gene sequence:

>1092_bases
ATGTTAAGAGCTGGTATTGTTGGGCTACCCAACGTTGGTAAATCAACCCTGTTTAATGCCTTAGTCGCGAATGCCAAAGC
TGAGGCTGCTAATTTCCCTTTTTGTACGATTGAACCCAATGTGGGCGTGGTCTCTGTTCCTGATCAGCGCTTACAAATTT
TATCTGAATTGTCGAATTCGGCCAAAACGGTGCCCACCCGGATCGAATTTGTAGATATTGCTGGGCTGGTGCAGGGAGCC
AGCCAAGGCGAAGGCTTAGGGAATCAATTCTTGGCCAATATCCGTGAAGTTGATGCCATAGTGCATGTGGTGCGCTGTTT
TGATAGTGACGATATTATCCATGTTGCAGGTTCAGTAGACCCTATGCGCGATATAGAAGTGATTAATTTGGAGCTGAGCT
TGGCAGATCTAGCCCAAATTGAGCGACGAATGGAGCGAACTAAAAAGACTGCTCGTAATAACAAAGAAGCCCAAGCCGAA
CTAGAAATCTTAGAAAAGCTCAGAGCCACTTTGAATGCAGGACAGCCAGCACGTCAGGCTGAGTTAAGCCCTGAAGAAAA
AGAAGTGATTAAGTACTTGGGCTTGCTAACTCTGAAGCCAATTATTTATGCAACCAATGTGTCTGAGGATGATTTGGCGA
CAGGGAATAAATGGGTAGAACAGGTGCGTGGGATTGCAACGGCCGAGTCAGCGGAAACCGTGATTATGTCTGCCCAAGTT
GAATCTGAATTAGTGGAACTAACGGATGAAGAGCGTCATGATTTTCTTGAAGCCTTGGGCGTTGAAGAGGGGGGCTTAAC
ATCTCTTATCCATGCTACCTATAAGCTTTTGGGGCTACGAACCTACTTTACATCTGGTCCTCAAGAGAGTCGAGCATGGA
CGATACCTATCGGCACAAAAGCTCCTCAAGCTGCTGGGGTCATTCATACCGACTTTGAGCGGGGATTTATTCGGGCAGAA
ACCGTTGGTTATCAAGACTTAGTGGAAAATGGATCGCTCACTGCTGCTAAGGAAAAAGGGTTAGTCCGCAGTGAGGGTAA
AGATTATCTTGTGCAAGAAGGAGATGTAATGCTCTTTCGGTTCAATGTTTAA

Upstream 100 bases:

>100_bases
TTAATGGCAAAGGATTATGAGTCACATTTGCATCACTTTTAGAGATGCTTATGTTGTCTTCATAATGTGTTTGAGCCCAT
GATTTGAGTTATCCCTTCCC

Downstream 100 bases:

>100_bases
CCGCATTCTTCATGTCTTGCACTTTCAGGCTAGAGACACGACATAGAACCCAAAAGCCTTAATAGCCAGCATTTAGGGTT
TAGTCGGGAGCGACCTTCAA

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MLRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDQRLQILSELSNSAKTVPTRIEFVDIAGLVQGA
SQGEGLGNQFLANIREVDAIVHVVRCFDSDDIIHVAGSVDPMRDIEVINLELSLADLAQIERRMERTKKTARNNKEAQAE
LEILEKLRATLNAGQPARQAELSPEEKEVIKYLGLLTLKPIIYATNVSEDDLATGNKWVEQVRGIATAESAETVIMSAQV
ESELVELTDEERHDFLEALGVEEGGLTSLIHATYKLLGLRTYFTSGPQESRAWTIPIGTKAPQAAGVIHTDFERGFIRAE
TVGYQDLVENGSLTAAKEKGLVRSEGKDYLVQEGDVMLFRFNV

Sequences:

>Translated_363_residues
MLRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDQRLQILSELSNSAKTVPTRIEFVDIAGLVQGA
SQGEGLGNQFLANIREVDAIVHVVRCFDSDDIIHVAGSVDPMRDIEVINLELSLADLAQIERRMERTKKTARNNKEAQAE
LEILEKLRATLNAGQPARQAELSPEEKEVIKYLGLLTLKPIIYATNVSEDDLATGNKWVEQVRGIATAESAETVIMSAQV
ESELVELTDEERHDFLEALGVEEGGLTSLIHATYKLLGLRTYFTSGPQESRAWTIPIGTKAPQAAGVIHTDFERGFIRAE
TVGYQDLVENGSLTAAKEKGLVRSEGKDYLVQEGDVMLFRFNV
>Mature_363_residues
MLRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDQRLQILSELSNSAKTVPTRIEFVDIAGLVQGA
SQGEGLGNQFLANIREVDAIVHVVRCFDSDDIIHVAGSVDPMRDIEVINLELSLADLAQIERRMERTKKTARNNKEAQAE
LEILEKLRATLNAGQPARQAELSPEEKEVIKYLGLLTLKPIIYATNVSEDDLATGNKWVEQVRGIATAESAETVIMSAQV
ESELVELTDEERHDFLEALGVEEGGLTSLIHATYKLLGLRTYFTSGPQESRAWTIPIGTKAPQAAGVIHTDFERGFIRAE
TVGYQDLVENGSLTAAKEKGLVRSEGKDYLVQEGDVMLFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=368, Percent_Identity=45.1086956521739, Blast_Score=311, Evalue=8e-85,
Organism=Homo sapiens, GI58761502, Length=214, Percent_Identity=40.1869158878505, Blast_Score=154, Evalue=9e-38,
Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=58.1267217630854, Blast_Score=420, Evalue=1e-119,
Organism=Escherichia coli, GI1789574, Length=142, Percent_Identity=31.6901408450704, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=43.4426229508197, Blast_Score=308, Evalue=3e-84,
Organism=Saccharomyces cerevisiae, GI6319499, Length=369, Percent_Identity=40.9214092140921, Blast_Score=263, Evalue=3e-71,
Organism=Saccharomyces cerevisiae, GI6321773, Length=381, Percent_Identity=38.0577427821522, Blast_Score=229, Evalue=5e-61,
Organism=Saccharomyces cerevisiae, GI6321649, Length=152, Percent_Identity=36.8421052631579, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24640873, Length=367, Percent_Identity=41.6893732970027, Blast_Score=280, Evalue=8e-76,
Organism=Drosophila melanogaster, GI24640877, Length=367, Percent_Identity=41.6893732970027, Blast_Score=280, Evalue=8e-76,
Organism=Drosophila melanogaster, GI24640875, Length=367, Percent_Identity=41.6893732970027, Blast_Score=280, Evalue=8e-76,
Organism=Drosophila melanogaster, GI24640879, Length=325, Percent_Identity=38.4615384615385, Blast_Score=226, Evalue=1e-59,
Organism=Drosophila melanogaster, GI24585318, Length=201, Percent_Identity=29.3532338308458, Blast_Score=71, Evalue=9e-13,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39629; Mature: 39629

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDQRLQILSELSNS
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHHC
AKTVPTRIEFVDIAGLVQGASQGEGLGNQFLANIREVDAIVHVVRCFDSDDIIHVAGSVD
CCCCCCEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PMRDIEVINLELSLADLAQIERRMERTKKTARNNKEAQAELEILEKLRATLNAGQPARQA
CCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHC
ELSPEEKEVIKYLGLLTLKPIIYATNVSEDDLATGNKWVEQVRGIATAESAETVIMSAQV
CCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHCCCHHHHHHHHCCCCCCCCCEEEEHHHH
ESELVELTDEERHDFLEALGVEEGGLTSLIHATYKLLGLRTYFTSGPQESRAWTIPIGTK
HHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
APQAAGVIHTDFERGFIRAETVGYQDLVENGSLTAAKEKGLVRSEGKDYLVQEGDVMLFR
CCCCCCCEEECHHCCEEEEHHCCHHHHHCCCCEEEHHHCCCHHCCCCCEEEECCCEEEEE
FNV
ECC
>Mature Secondary Structure
MLRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDQRLQILSELSNS
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHHC
AKTVPTRIEFVDIAGLVQGASQGEGLGNQFLANIREVDAIVHVVRCFDSDDIIHVAGSVD
CCCCCCEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PMRDIEVINLELSLADLAQIERRMERTKKTARNNKEAQAELEILEKLRATLNAGQPARQA
CCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHC
ELSPEEKEVIKYLGLLTLKPIIYATNVSEDDLATGNKWVEQVRGIATAESAETVIMSAQV
CCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHCCCHHHHHHHHCCCCCCCCCEEEEHHHH
ESELVELTDEERHDFLEALGVEEGGLTSLIHATYKLLGLRTYFTSGPQESRAWTIPIGTK
HHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
APQAAGVIHTDFERGFIRAETVGYQDLVENGSLTAAKEKGLVRSEGKDYLVQEGDVMLFR
CCCCCCCEEECHHCCEEEEHHCCHHHHHCCCCEEEHHHCCCHHCCCCCEEEECCCEEEEE
FNV
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]