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The map label for this gene is rbgA [H]

Identifier: 158335763

GI number: 158335763

Start: 2651558

End: 2652433

Strand: Reverse

Name: rbgA [H]

Synonym: AM1_2614

Alternate gene names: 158335763

Gene position: 2652433-2651558 (Counterclockwise)

Preceding gene: 158335764

Following gene: 158335760

Centisome position: 40.78

GC content: 49.66

Gene sequence:

>876_bases
ATGTCCACTCCCCCTATTCAGTGGTATCCCGGTCATATCGCCAAGGCTGAAAAAGCCTTAATTGAGCAGCTCAAAAAGGT
AGATGTGGTGCTGGAAGTTCGGGATGCTCGCATTCCCCACTCCAGTCATCACCCGCAGATCCAGAAATGGATTGGAGATA
AGCCCCATGTGCTGGTCTTGAATCGGATTGATTTGGTTACTCCGGTCTCTCATCAGCTCTGGCTTGATGCTCTTAAGGCC
GAAGGCCAGGTGCCCCACTGTACGGATGCTCAGCATGGTAAGGGCATTAAAGCTGTGATCAAAGCAGCCGAAAAAGTGGG
TGTTAGTATCAATCAACGACGGCGCAATCGCGGTATGCGACCTCGCCCTGTGCGTGCGGTGGTGTTGGGGTTCCCGAATG
TGGGTAAATCTGCTTTAATCAATCGTCTGTTGAAGCGTCGCATTGTTGAAAGTGCTCGCCGTCCAGGGGTGACTCGCCAA
CTCCGCTGGGTACGGGTCTCTCAAGATTTAGAACTATTAGATACCCCCGGTGTATTACCGGCCAAATTAAATAATCAAGA
AGCCGCCTATAAATTGGCCATTTGTGATGATATCGGCACTGCTGCCTATGAGAATCAGTTGGTAGCCACGGCCTTAATTG
AGTTGATCCAAGGGTTAGAGTCTTCTAAGTCGAAGCCTGGATTCTTGCCAAACCAAGTTTTGCAAACTCGCTATCAGCTC
GATCCTACGTCCATAACCGCCGCAGATTATTTAGCTACCGCAGCAGAACAGCGACATCAAGGGGATCTAGAGCGTATGGC
TCAACAGGTTCTCAATGATTTTCGCAAAGGTTTATTGGGGAAAGTGACGTTGGAGCTACCACCATCTGTTCACTAG

Upstream 100 bases:

>100_bases
CAAGCCCCACCTGCAGTTGTTCAGGGGGCACGCGATACTCTGGCTGAAGCTGAGAAACAAGCTGAGATCTTGCGCGATCG
CCTAGAGCGACTCTAGGTTT

Downstream 100 bases:

>100_bases
CTCGTGGTGTAGTGATTCAGTATTTCCATGGGATCAGTGCAAGCTTAAAAGGTTAACGCTTACAGCTTAGATGACCTCTT
CTAGGCCATTTTCAGTATCT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MSTPPIQWYPGHIAKAEKALIEQLKKVDVVLEVRDARIPHSSHHPQIQKWIGDKPHVLVLNRIDLVTPVSHQLWLDALKA
EGQVPHCTDAQHGKGIKAVIKAAEKVGVSINQRRRNRGMRPRPVRAVVLGFPNVGKSALINRLLKRRIVESARRPGVTRQ
LRWVRVSQDLELLDTPGVLPAKLNNQEAAYKLAICDDIGTAAYENQLVATALIELIQGLESSKSKPGFLPNQVLQTRYQL
DPTSITAADYLATAAEQRHQGDLERMAQQVLNDFRKGLLGKVTLELPPSVH

Sequences:

>Translated_291_residues
MSTPPIQWYPGHIAKAEKALIEQLKKVDVVLEVRDARIPHSSHHPQIQKWIGDKPHVLVLNRIDLVTPVSHQLWLDALKA
EGQVPHCTDAQHGKGIKAVIKAAEKVGVSINQRRRNRGMRPRPVRAVVLGFPNVGKSALINRLLKRRIVESARRPGVTRQ
LRWVRVSQDLELLDTPGVLPAKLNNQEAAYKLAICDDIGTAAYENQLVATALIELIQGLESSKSKPGFLPNQVLQTRYQL
DPTSITAADYLATAAEQRHQGDLERMAQQVLNDFRKGLLGKVTLELPPSVH
>Mature_290_residues
STPPIQWYPGHIAKAEKALIEQLKKVDVVLEVRDARIPHSSHHPQIQKWIGDKPHVLVLNRIDLVTPVSHQLWLDALKAE
GQVPHCTDAQHGKGIKAVIKAAEKVGVSINQRRRNRGMRPRPVRAVVLGFPNVGKSALINRLLKRRIVESARRPGVTRQL
RWVRVSQDLELLDTPGVLPAKLNNQEAAYKLAICDDIGTAAYENQLVATALIELIQGLESSKSKPGFLPNQVLQTRYQLD
PTSITAADYLATAAEQRHQGDLERMAQQVLNDFRKGLLGKVTLELPPSVH

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=303, Percent_Identity=30.03300330033, Blast_Score=114, Evalue=9e-26,
Organism=Homo sapiens, GI296317324, Length=203, Percent_Identity=32.512315270936, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI9506611, Length=203, Percent_Identity=32.512315270936, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193211047, Length=219, Percent_Identity=34.703196347032, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17534827, Length=168, Percent_Identity=32.1428571428571, Blast_Score=84, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6320842, Length=186, Percent_Identity=31.1827956989247, Blast_Score=76, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6323744, Length=257, Percent_Identity=26.0700389105058, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85815858, Length=310, Percent_Identity=26.7741935483871, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28572990, Length=198, Percent_Identity=28.2828282828283, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI19922460, Length=278, Percent_Identity=25.8992805755396, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32414; Mature: 32283

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPPIQWYPGHIAKAEKALIEQLKKVDVVLEVRDARIPHSSHHPQIQKWIGDKPHVLVL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHCCCCCCEEEE
NRIDLVTPVSHQLWLDALKAEGQVPHCTDAQHGKGIKAVIKAAEKVGVSINQRRRNRGMR
ECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCC
PRPVRAVVLGFPNVGKSALINRLLKRRIVESARRPGVTRQLRWVRVSQDLELLDTPGVLP
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEECCCCHHHCCCCCCC
AKLNNQEAAYKLAICDDIGTAAYENQLVATALIELIQGLESSKSKPGFLPNQVLQTRYQL
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
DPTSITAADYLATAAEQRHQGDLERMAQQVLNDFRKGLLGKVTLELPPSVH
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHCEEEEECCCCCC
>Mature Secondary Structure 
STPPIQWYPGHIAKAEKALIEQLKKVDVVLEVRDARIPHSSHHPQIQKWIGDKPHVLVL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHCCCCCCEEEE
NRIDLVTPVSHQLWLDALKAEGQVPHCTDAQHGKGIKAVIKAAEKVGVSINQRRRNRGMR
ECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCC
PRPVRAVVLGFPNVGKSALINRLLKRRIVESARRPGVTRQLRWVRVSQDLELLDTPGVLP
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEECCCCHHHCCCCCCC
AKLNNQEAAYKLAICDDIGTAAYENQLVATALIELIQGLESSKSKPGFLPNQVLQTRYQL
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
DPTSITAADYLATAAEQRHQGDLERMAQQVLNDFRKGLLGKVTLELPPSVH
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]