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The map label for this gene is apcB [H]

Identifier: 158335528

GI number: 158335528

Start: 2379984

End: 2380457

Strand: Reverse

Name: apcB [H]

Synonym: AM1_2376

Alternate gene names: 158335528

Gene position: 2380457-2379984 (Counterclockwise)

Preceding gene: 158335530

Following gene: 158335525

Centisome position: 36.6

GC content: 48.31

Gene sequence:

>474_bases
ATGGAAAACACAATCACCTCTGTGATTACCTCATTTGACCTTCAAGGCAAATACATTGATGGTGGTGCTTTACAGCAGCT
CAAACATAGCTTCCAAATTGATGAACCGAAAGTTGAAGCCGCTGCAATCATCCGCGACAACGCAGCAGAAATCGTCAAAG
AGGCGGTTGCTAAGTCCCTAGATGTGCCAGGTAGCGATGCTTTACCAACGACCCGTCGTTATGCTGCATGTGTGCGGGAT
CTAGACTTTTATCTTCGCTATGCAACTTATGCCATGGTTGCTGGCGATACGACTATTTTGGATGAGCGCGTGCTCAATGG
TCTCAAGGAAACCTACCTAGCTTTAGGTGTGTCTCTAGCCGCAACAATCAAGGCCATCCGTGCAATGCAAGAGGTGACCA
GTGATGTAGTGGGTTCTGCTGCAGGCCATGAGATTAGCCCCTATTTTGAGCATCTCTGTGCAGGCTTGAGCTAG

Upstream 100 bases:

>100_bases
TGCTAGCTCCGAATAATGGTCAATGTAGAGCTATAAAGCTTTTAATTTTTTAGATTTTATCGACATTTAACAAGGAAGCA
GGTAAGGAAGTTAAATAATG

Downstream 100 bases:

>100_bases
GTTTCAACGTCGCTATCTCCAAAAATTGCTCGATAACAATGATTTAAGCGCTCTCAGAAATCTGAGAGCGCTTATGCTTT
AAGAGTAACGGCTATTCTTG

Product: allophycocyanin beta subunit ApcB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MENTITSVITSFDLQGKYIDGGALQQLKHSFQIDEPKVEAAAIIRDNAAEIVKEAVAKSLDVPGSDALPTTRRYAACVRD
LDFYLRYATYAMVAGDTTILDERVLNGLKETYLALGVSLAATIKAIRAMQEVTSDVVGSAAGHEISPYFEHLCAGLS

Sequences:

>Translated_157_residues
MENTITSVITSFDLQGKYIDGGALQQLKHSFQIDEPKVEAAAIIRDNAAEIVKEAVAKSLDVPGSDALPTTRRYAACVRD
LDFYLRYATYAMVAGDTTILDERVLNGLKETYLALGVSLAATIKAIRAMQEVTSDVVGSAAGHEISPYFEHLCAGLS
>Mature_157_residues
MENTITSVITSFDLQGKYIDGGALQQLKHSFQIDEPKVEAAAIIRDNAAEIVKEAVAKSLDVPGSDALPTTRRYAACVRD
LDFYLRYATYAMVAGDTTILDERVLNGLKETYLALGVSLAATIKAIRAMQEVTSDVVGSAAGHEISPYFEHLCAGLS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. Allophycocyanin has a maximum absorption at approximately 650 nanometers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006245
- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 16928; Mature: 16928

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENTITSVITSFDLQGKYIDGGALQQLKHSFQIDEPKVEAAAIIRDNAAEIVKEAVAKSL
CCHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
DVPGSDALPTTRRYAACVRDLDFYLRYATYAMVAGDTTILDERVLNGLKETYLALGVSLA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ATIKAIRAMQEVTSDVVGSAAGHEISPYFEHLCAGLS
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MENTITSVITSFDLQGKYIDGGALQQLKHSFQIDEPKVEAAAIIRDNAAEIVKEAVAKSL
CCHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
DVPGSDALPTTRRYAACVRDLDFYLRYATYAMVAGDTTILDERVLNGLKETYLALGVSLA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ATIKAIRAMQEVTSDVVGSAAGHEISPYFEHLCAGLS
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA