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The map label for this gene is yomI [H]

Identifier: 158335504

GI number: 158335504

Start: 2354222

End: 2355094

Strand: Direct

Name: yomI [H]

Synonym: AM1_2352

Alternate gene names: 158335504

Gene position: 2354222-2355094 (Clockwise)

Preceding gene: 158335503

Following gene: 158335505

Centisome position: 36.2

GC content: 51.78

Gene sequence:

>873_bases
ATGAGTTATCAAAATCTTCGTAGGCTGAGCGTTCTCCTCTTCGCTACAGTAGGGAGCACCCTATCTGCCGCCTTATCTGC
CCACGCGTTAGACGTCACTGTAACCCCTAAAAAGCCCAGATTGGGTGATACCCTGGCCATTACCGTCAAGCCTGATCCAG
GCGAGCAACTCACGCAAGCACCTGTCATCAAAGTTGCAGGCAAAAAACTGCCTGTTTATCCCATTGCGGCCAACCGTTGG
CGGGCTTTTTTACCGACCATTCCCTTGGAAAAACATGGTCGTCGCAGTCTGATCGTGACGGGAAATCAACAAGCTCGCAA
CATGGTGCTGTGGATCGGGAAAAAATGGTTCCGGACCCAGAGCATTTGGTTGCCACCGGGTACAGGGTCAGGCACAGACT
TTGAATTTGATCGGGTGGATGCCTTTAAAGCCATTGTCTCTCCTAAAAAACTGTGGAGCGGCAAGTTCCGACGTCCCAAT
AATGGCCCCCTTACGGCTGGGTATGGGATCAAGCGGATTTACAATGGCGATTACTCCGATCCCGATTATCATCGGGGCTT
AGATTATGCAGGCTGGGGTGGTTCTCCTGTGAAAGCCTCAGCTGCCGGACAGGTGCGCCTTGTGGGTCGAGAATCCCAAG
GGTTCCGGATTCATGGGAATGTCGTTGGCATTGATCATGGCCAAGGGGTGAACACGGTATATCTACATTTACGAGATATA
AAAGTCAAAGAAGGTCAAAGGGTACGAGCAGGCCAAATCATCGGCACTGTCGGCTCAACGGGCGCATCAACAGGCCCCCA
CCTTCACTTTGGGTTAAATGTGAATGGTCAAGCCGTCGATCCCACTCCGTGGCTGAAATGGGGATTTCAGTAA

Upstream 100 bases:

>100_bases
TCAACGACACCCCAAGCAGGGGTGTCTTGGCTCGGCTAGTGGAACCTAGTTCATTGCCATCTAGACTATGTACTTGTAGA
CTGCATCCGTTTATCTCTGC

Downstream 100 bases:

>100_bases
CAGAGGCCTTTTTTCTCTCTGCATTCTGATTCAGGGCCGTGATCTGAGAGGATAGGTCTCAGATGGATTGTGGAGGCCCC
TAGAAGATTGCAGAAGTTGT

Product: peptidase M23 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSYQNLRRLSVLLFATVGSTLSAALSAHALDVTVTPKKPRLGDTLAITVKPDPGEQLTQAPVIKVAGKKLPVYPIAANRW
RAFLPTIPLEKHGRRSLIVTGNQQARNMVLWIGKKWFRTQSIWLPPGTGSGTDFEFDRVDAFKAIVSPKKLWSGKFRRPN
NGPLTAGYGIKRIYNGDYSDPDYHRGLDYAGWGGSPVKASAAGQVRLVGRESQGFRIHGNVVGIDHGQGVNTVYLHLRDI
KVKEGQRVRAGQIIGTVGSTGASTGPHLHFGLNVNGQAVDPTPWLKWGFQ

Sequences:

>Translated_290_residues
MSYQNLRRLSVLLFATVGSTLSAALSAHALDVTVTPKKPRLGDTLAITVKPDPGEQLTQAPVIKVAGKKLPVYPIAANRW
RAFLPTIPLEKHGRRSLIVTGNQQARNMVLWIGKKWFRTQSIWLPPGTGSGTDFEFDRVDAFKAIVSPKKLWSGKFRRPN
NGPLTAGYGIKRIYNGDYSDPDYHRGLDYAGWGGSPVKASAAGQVRLVGRESQGFRIHGNVVGIDHGQGVNTVYLHLRDI
KVKEGQRVRAGQIIGTVGSTGASTGPHLHFGLNVNGQAVDPTPWLKWGFQ
>Mature_289_residues
SYQNLRRLSVLLFATVGSTLSAALSAHALDVTVTPKKPRLGDTLAITVKPDPGEQLTQAPVIKVAGKKLPVYPIAANRWR
AFLPTIPLEKHGRRSLIVTGNQQARNMVLWIGKKWFRTQSIWLPPGTGSGTDFEFDRVDAFKAIVSPKKLWSGKFRRPNN
GPLTAGYGIKRIYNGDYSDPDYHRGLDYAGWGGSPVKASAAGQVRLVGRESQGFRIHGNVVGIDHGQGVNTVYLHLRDIK
VKEGQRVRAGQIIGTVGSTGASTGPHLHFGLNVNGQAVDPTPWLKWGFQ

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=98, Percent_Identity=44.8979591836735, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082174, Length=109, Percent_Identity=37.6146788990826, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789099, Length=102, Percent_Identity=37.2549019607843, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082297, Length=101, Percent_Identity=39.6039603960396, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 31663; Mature: 31531

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYQNLRRLSVLLFATVGSTLSAALSAHALDVTVTPKKPRLGDTLAITVKPDPGEQLTQA
CCHHHHHHHHHHEEEHHHHHHHHHHHHEEEEEEECCCCCCCCCEEEEEECCCCCCHHHCC
PVIKVAGKKLPVYPIAANRWRAFLPTIPLEKHGRRSLIVTGNQQARNMVLWIGKKWFRTQ
CEEEECCCCCCEEEECCCCCEEECCCCCCCCCCCEEEEEECCCCCCEEEEEECCHHEEEC
SIWLPPGTGSGTDFEFDRVDAFKAIVSPKKLWSGKFRRPNNGPLTAGYGIKRIYNGDYSD
EEEECCCCCCCCCEEHHHHHHHHHHCCCHHHHCCCCCCCCCCCEECCCCEEEEECCCCCC
PDYHRGLDYAGWGGSPVKASAAGQVRLVGRESQGFRIHGNVVGIDHGQGVNTVYLHLRDI
CHHHCCCCCCCCCCCCEEECCCCEEEEEEECCCCEEEECEEEEECCCCCCCEEEEEEEEE
KVKEGQRVRAGQIIGTVGSTGASTGPHLHFGLNVNGQAVDPTPWLKWGFQ
EECCCCEEECCEEEEECCCCCCCCCCEEEEEEECCCCEECCCCCCCCCCC
>Mature Secondary Structure 
SYQNLRRLSVLLFATVGSTLSAALSAHALDVTVTPKKPRLGDTLAITVKPDPGEQLTQA
CHHHHHHHHHHEEEHHHHHHHHHHHHEEEEEEECCCCCCCCCEEEEEECCCCCCHHHCC
PVIKVAGKKLPVYPIAANRWRAFLPTIPLEKHGRRSLIVTGNQQARNMVLWIGKKWFRTQ
CEEEECCCCCCEEEECCCCCEEECCCCCCCCCCCEEEEEECCCCCCEEEEEECCHHEEEC
SIWLPPGTGSGTDFEFDRVDAFKAIVSPKKLWSGKFRRPNNGPLTAGYGIKRIYNGDYSD
EEEECCCCCCCCCEEHHHHHHHHHHCCCHHHHCCCCCCCCCCCEECCCCEEEEECCCCCC
PDYHRGLDYAGWGGSPVKASAAGQVRLVGRESQGFRIHGNVVGIDHGQGVNTVYLHLRDI
CHHHCCCCCCCCCCCCEEECCCCEEEEEEECCCCEEEECEEEEECCCCCCCEEEEEEEEE
KVKEGQRVRAGQIIGTVGSTGASTGPHLHFGLNVNGQAVDPTPWLKWGFQ
EECCCCEEECCEEEEECCCCCCCCCCEEEEEEECCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]