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The map label for this gene is dacB [C]

Identifier: 158335463

GI number: 158335463

Start: 2310633

End: 2311913

Strand: Direct

Name: dacB [C]

Synonym: AM1_2311

Alternate gene names: 158335463

Gene position: 2310633-2311913 (Clockwise)

Preceding gene: 158335461

Following gene: 158335471

Centisome position: 35.53

GC content: 49.65

Gene sequence:

>1281_bases
ATGTTGCAACTGTTTAGTACCGGTCTAATCCCATTGTGGTTAAACACAGTCGGGGTTTTGGCGAATCAAACAGTGCCTCC
TTTAACTCCATTCAATCTACTCCATATCAATACCCCTGACGTGAAAGTTGCAGAGATTTGGCAGGATTCATTAAATCAGT
TCTCATCCCAAGGATTTACTCCTACTGCCCAGGGATTTTGGTTACAAACCCAAGATCAGCTCTTGGTTAACCATAATGCT
CAGCAGCCTCTTCCTGCTGCTTCTTTAACCAAAGTGGCGACCACCTTAGCCGCTTTAAAGACTTGGGGGCCTCACCATAC
GTTCCTGACCGAAGTTAGATCCACAGGGCCTGTTGTGGATGGCGTGTTGCAGGGAGATTTAGTGATTGTAGGGGGTGGAG
ATCCTCTATTTGTAGGTCCTGAAGCCACTAGCCTGGGATATAGCCTCAATCAACTGGGAATTCAAACTGTCTCCGGCAAC
TTAATTATTTCCGGCAACTTCTGGATGGATTTTCTCACTAAACCTAAACAAGCGGGAGAGCGTTTGCGCCAAGGGTTAAA
TGGGAAAATCTATCAGACGACGGAAGAGAGTCGTTATACGTCACCTACAACGACTCAACCAGCCACCCAGTTAGCCATTT
CTGGATCAGTACAATGGCGACCTTATCCCCCGCAATCCCAACTGCTCTTGCGGCATCAGTCTCTCCCCATCTTTGCCTTG
CTCAAACAGATGAACGTCAATAGCAATAATGCCTTAGCCGAATCCCTGGCCTCAGGTATCGGTAATGGCCCCACTCTAGT
GGCTCAGGTCACAGCAGCCACTGGTGTATCTACGAAGGAGATTCGCTTACAGAACGGTTCAGGGTTAGGGCAGGATAATC
GTCTTTCTCCCCGCGCTGTGGTAGCGTTACTCCTCGGTATTCAACAGGAGCTAAAGCTCCATCAGCTCACCCTTGCCGAT
GTCTTTCCAGTGGCTAAACGGGACCTGGGCACCATTGAAGATCGTCAGCTTCCCACTGCAGCAATTGTGAAAACTGGAAC
CCTATGGAATGTCAGTGCCCTCGCTGGGGTTATTCCGACTCAGAAATTAGGACCAGTATGGTTTACGATTATCAACCGCG
GCGAGAATATTGACGGTTTTAGGAGAGACCAAGACCGTATCCTCCAACAGCTCACCCAACGCTTAGGGGCAGATGCCAAA
AGCATCAATGACCTGCGCCCCAGCCGTCCCATGCCTACCTTAGGTGATCCCAAACGAAACCAAGTCGCTGGCCGTCGCTA
G

Upstream 100 bases:

>100_bases
AAACTGGACAATCTATCCGCTCCAGACTCACTTTCACAAAAATTCAATATTTACGCACAATACAACTACTGCTCCTTGAT
ACTTGTGGTGAGAAAAATCC

Downstream 100 bases:

>100_bases
CACATCAACGCTAGGGAACGATTTCCACTACTGCTTCTCCCCCTTCAACTTCTAGAGTTTTCTGGAGTAGATTACCCATA
GCCCTCGTCCCCGTCATTCG

Product: D-Ala-D-Ala carboxypeptidase

Products: NA

Alternate protein names: D-Ala-D-Ala Carboxypeptidase 3 Family; D-Alanyl-D-Alanine Carboxypeptidase; D-Ala-D-Ala Carboxypeptidase; Carboxypeptidase

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MLQLFSTGLIPLWLNTVGVLANQTVPPLTPFNLLHINTPDVKVAEIWQDSLNQFSSQGFTPTAQGFWLQTQDQLLVNHNA
QQPLPAASLTKVATTLAALKTWGPHHTFLTEVRSTGPVVDGVLQGDLVIVGGGDPLFVGPEATSLGYSLNQLGIQTVSGN
LIISGNFWMDFLTKPKQAGERLRQGLNGKIYQTTEESRYTSPTTTQPATQLAISGSVQWRPYPPQSQLLLRHQSLPIFAL
LKQMNVNSNNALAESLASGIGNGPTLVAQVTAATGVSTKEIRLQNGSGLGQDNRLSPRAVVALLLGIQQELKLHQLTLAD
VFPVAKRDLGTIEDRQLPTAAIVKTGTLWNVSALAGVIPTQKLGPVWFTIINRGENIDGFRRDQDRILQQLTQRLGADAK
SINDLRPSRPMPTLGDPKRNQVAGRR

Sequences:

>Translated_426_residues
MLQLFSTGLIPLWLNTVGVLANQTVPPLTPFNLLHINTPDVKVAEIWQDSLNQFSSQGFTPTAQGFWLQTQDQLLVNHNA
QQPLPAASLTKVATTLAALKTWGPHHTFLTEVRSTGPVVDGVLQGDLVIVGGGDPLFVGPEATSLGYSLNQLGIQTVSGN
LIISGNFWMDFLTKPKQAGERLRQGLNGKIYQTTEESRYTSPTTTQPATQLAISGSVQWRPYPPQSQLLLRHQSLPIFAL
LKQMNVNSNNALAESLASGIGNGPTLVAQVTAATGVSTKEIRLQNGSGLGQDNRLSPRAVVALLLGIQQELKLHQLTLAD
VFPVAKRDLGTIEDRQLPTAAIVKTGTLWNVSALAGVIPTQKLGPVWFTIINRGENIDGFRRDQDRILQQLTQRLGADAK
SINDLRPSRPMPTLGDPKRNQVAGRR
>Mature_426_residues
MLQLFSTGLIPLWLNTVGVLANQTVPPLTPFNLLHINTPDVKVAEIWQDSLNQFSSQGFTPTAQGFWLQTQDQLLVNHNA
QQPLPAASLTKVATTLAALKTWGPHHTFLTEVRSTGPVVDGVLQGDLVIVGGGDPLFVGPEATSLGYSLNQLGIQTVSGN
LIISGNFWMDFLTKPKQAGERLRQGLNGKIYQTTEESRYTSPTTTQPATQLAISGSVQWRPYPPQSQLLLRHQSLPIFAL
LKQMNVNSNNALAESLASGIGNGPTLVAQVTAATGVSTKEIRLQNGSGLGQDNRLSPRAVVALLLGIQQELKLHQLTLAD
VFPVAKRDLGTIEDRQLPTAAIVKTGTLWNVSALAGVIPTQKLGPVWFTIINRGENIDGFRRDQDRILQQLTQRLGADAK
SINDLRPSRPMPTLGDPKRNQVAGRR

Specific function: Not Involved In Transpeptidation But Exclusively Catalyzes A Dd-Carboxypeptidase And Dd-Endopeptidase Reaction. [C]

COG id: COG2027

COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.16.4; 3.4.99.- [C]

Molecular weight: Translated: 46202; Mature: 46202

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQLFSTGLIPLWLNTVGVLANQTVPPLTPFNLLHINTPDVKVAEIWQDSLNQFSSQGFT
CCEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
PTAQGFWLQTQDQLLVNHNAQQPLPAASLTKVATTLAALKTWGPHHTFLTEVRSTGPVVD
CCCCCEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
GVLQGDLVIVGGGDPLFVGPEATSLGYSLNQLGIQTVSGNLIISGNFWMDFLTKPKQAGE
HEECCCEEEEECCCEEEECCCCHHHCCCHHHHCEEEECCCEEEECCHHHHHHCCCHHHHH
RLRQGLNGKIYQTTEESRYTSPTTTQPATQLAISGSVQWRPYPPQSQLLLRHQSLPIFAL
HHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCEEECCCCCHHHHHHHHCCCCHHHH
LKQMNVNSNNALAESLASGIGNGPTLVAQVTAATGVSTKEIRLQNGSGLGQDNRLSPRAV
HHHHCCCCCHHHHHHHHHHCCCCCEEEEEEHHHCCCCEEEEEEECCCCCCCCCCCCHHHH
VALLLGIQQELKLHQLTLADVFPVAKRDLGTIEDRQLPTAAIVKTGTLWNVSALAGVIPT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCEEHHHHHHCCCC
QKLGPVWFTIINRGENIDGFRRDQDRILQQLTQRLGADAKSINDLRPSRPMPTLGDPKRN
CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCC
QVAGRR
CCCCCC
>Mature Secondary Structure
MLQLFSTGLIPLWLNTVGVLANQTVPPLTPFNLLHINTPDVKVAEIWQDSLNQFSSQGFT
CCEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
PTAQGFWLQTQDQLLVNHNAQQPLPAASLTKVATTLAALKTWGPHHTFLTEVRSTGPVVD
CCCCCEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
GVLQGDLVIVGGGDPLFVGPEATSLGYSLNQLGIQTVSGNLIISGNFWMDFLTKPKQAGE
HEECCCEEEEECCCEEEECCCCHHHCCCHHHHCEEEECCCEEEECCHHHHHHCCCHHHHH
RLRQGLNGKIYQTTEESRYTSPTTTQPATQLAISGSVQWRPYPPQSQLLLRHQSLPIFAL
HHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCEEECCCCCHHHHHHHHCCCCHHHH
LKQMNVNSNNALAESLASGIGNGPTLVAQVTAATGVSTKEIRLQNGSGLGQDNRLSPRAV
HHHHCCCCCHHHHHHHHHHCCCCCEEEEEEHHHCCCCEEEEEEECCCCCCCCCCCCHHHH
VALLLGIQQELKLHQLTLADVFPVAKRDLGTIEDRQLPTAAIVKTGTLWNVSALAGVIPT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCEEHHHHHHCCCC
QKLGPVWFTIINRGENIDGFRRDQDRILQQLTQRLGADAKSINDLRPSRPMPTLGDPKRN
CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCC
QVAGRR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: Preferential cleavage is (Ac)2-L-Lys-D-Ala D-Ala and Also transpeptidation of peptidyl-alanyl moieties that are N-acyl substituents of D-alanine [C]

General reaction: Hydrolase; Acting on peptide bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA