Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 158335457

GI number: 158335457

Start: 2303701

End: 2305419

Strand: Direct

Name: yciR [C]

Synonym: AM1_2305

Alternate gene names: 158335457

Gene position: 2303701-2305419 (Clockwise)

Preceding gene: 158335456

Following gene: 158335461

Centisome position: 35.42

GC content: 46.95

Gene sequence:

>1719_bases
ATGCCAAAAATTTTAATCATCGAGGACGAACCTCAAATTCGCGACATCATTCAAGAAATTTTAGAGTGTGAAGGATATCG
CACCCTTGAAGCAGACAATGGTTTAACGGGGTTACAACTGGCACAGCAAAGCCCTCCAGACCTCATTGTTTGTGATGTCA
TGATGCCAGAGCTAGATGGATTTGATGTTTTAAAGGGACTGAGAGCCAACCCAGGCATTGGCAGCATTCCGATGATCTTT
TTAACCGCCAAAACAGATCGGGCGAGTGTACGAAAAGGGATGAATTTAGGGGCAGATGACTACATCACCAAGCCATTTAC
CCATCTAGAACTGTTAAGTGCCATTGATGCACGGCTCAAAAAACAAGCCTTAGTGACTCAACAGTACACACAAACGATTC
AAGGGCTAGAAGCAGGTCTCAATGCCCTGACCTACTACGATCATCTCACCCAGTTACCCAATCGTCGCTTACTCGAAGAA
CAATTCCAGCATATTCAGGCAGAGAAGCAAATCGCAGATACGTTAGATGCTCTAGTTTTAGTCGGTATTGATCGCTTTGA
GTGGATTAAAAGTACCCTAGGGGCTGCATTTAGTGATCAACTCGTTCAAGCGATTACCCAGCAGTTGTCCGCCCACCGCT
ATATGGGCAACTATGCCATGGCGATGGTGGCTCGTATCGAGGCCGATCAATTTGCCATCATTCCTCGAAACATTAAGTCC
CGTCCAGATCTCGACCAGTTTGCGAAACAAATTCTAGACATCTTGGCCACGCCTTTCTACGTTGTGGATCAGGAACTCTG
TATTACGCCTAGCATTGGCATGACCTGCTATCCCAAAGGTAGCACTGATATCGGCACCTTGATTAGCAACGCCGAGATAG
CAATGTATCAGTCCAAACAGCAGGTTGGCCCCAGTGCCGAGTTTTATTTACCGACAATGCGATCGCAATGTTCTCAAACC
CTCACCATGGCTGCACGATTACGGCATGCCCTGGATAAAAACGAATTGCGCCTGTATTACCAACCCCATATTGACTTGCA
GACGAGTCAAGTTGTGGGAGCCGAAGCTTTGTTGCGCTGGCATCATCCAGAATGGGGGGTGCTGTCCCCTAACGTCTTTA
TCCCCATTGCCGAAGAAACGGACTTAATTTTAGACATTGGCGAATGGGTACTGCGAACCTCCTGCCTGCAAGTCAAGCGA
TGGCAGCAAACCTGTGGTCGGCCGTTGCAAATGCTCGTCAATTTATCGCCCCGGCAACTGATACAGCCCGCCTTACCCCC
CATGCTCCATGAAATCCTGTCAGGGAACGCTCTGGAGCCGAATAGCTTAGTTTTAGAGCTAACAGAAAGCACCTTGATGC
AAGATCCGGATCTGGCCCTCAAAGTCATGCATCAAATTAAGGCAACAGGCATACGCCTATCTATCGATGATTTTGGCACT
GGTTATTCTTCCTTAAGCTATTTACAGCGTTTCCCACTAGATATCCTCAAGATTGATCGAGGCTTTATCCATGAGATTAA
TCGTCAACCTACGAATGCGGCGATCACGACAGCCATCATCCAAATGGGCCACAAGCTGGGATTATCTTTGATTGGTGAAG
GGGTAGAGACTTTAGCTGAAAGAAAGTTTTTACTAGACCATCAATGTGATGGTATCCAAGGATATTTAATCAGTCCTCCC
TTACCCGCAGCTGAGCTCTTAAAATACTTCCCTGAGTAA

Upstream 100 bases:

>100_bases
GGTTTGTCCCAAACTTCCAATAGTAAAATGTAGGCATTGTCCTAAAAAGTCACTTAAAGCCATCATTCAAACTTCTGAGT
GCGCCTGTTCTGAGTCTAAA

Downstream 100 bases:

>100_bases
AATCAGAATCTCTGTCAAGGCTGTCGATGAACTAGGGTTGCCCCCGATTGAGCTGTAGGCAAAACCAATAGCTCACTGAT
ATTGACATGGGGAGGGCGAG

Product: sensory box/response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 572; Mature: 571

Protein sequence:

>572_residues
MPKILIIEDEPQIRDIIQEILECEGYRTLEADNGLTGLQLAQQSPPDLIVCDVMMPELDGFDVLKGLRANPGIGSIPMIF
LTAKTDRASVRKGMNLGADDYITKPFTHLELLSAIDARLKKQALVTQQYTQTIQGLEAGLNALTYYDHLTQLPNRRLLEE
QFQHIQAEKQIADTLDALVLVGIDRFEWIKSTLGAAFSDQLVQAITQQLSAHRYMGNYAMAMVARIEADQFAIIPRNIKS
RPDLDQFAKQILDILATPFYVVDQELCITPSIGMTCYPKGSTDIGTLISNAEIAMYQSKQQVGPSAEFYLPTMRSQCSQT
LTMAARLRHALDKNELRLYYQPHIDLQTSQVVGAEALLRWHHPEWGVLSPNVFIPIAEETDLILDIGEWVLRTSCLQVKR
WQQTCGRPLQMLVNLSPRQLIQPALPPMLHEILSGNALEPNSLVLELTESTLMQDPDLALKVMHQIKATGIRLSIDDFGT
GYSSLSYLQRFPLDILKIDRGFIHEINRQPTNAAITTAIIQMGHKLGLSLIGEGVETLAERKFLLDHQCDGIQGYLISPP
LPAAELLKYFPE

Sequences:

>Translated_572_residues
MPKILIIEDEPQIRDIIQEILECEGYRTLEADNGLTGLQLAQQSPPDLIVCDVMMPELDGFDVLKGLRANPGIGSIPMIF
LTAKTDRASVRKGMNLGADDYITKPFTHLELLSAIDARLKKQALVTQQYTQTIQGLEAGLNALTYYDHLTQLPNRRLLEE
QFQHIQAEKQIADTLDALVLVGIDRFEWIKSTLGAAFSDQLVQAITQQLSAHRYMGNYAMAMVARIEADQFAIIPRNIKS
RPDLDQFAKQILDILATPFYVVDQELCITPSIGMTCYPKGSTDIGTLISNAEIAMYQSKQQVGPSAEFYLPTMRSQCSQT
LTMAARLRHALDKNELRLYYQPHIDLQTSQVVGAEALLRWHHPEWGVLSPNVFIPIAEETDLILDIGEWVLRTSCLQVKR
WQQTCGRPLQMLVNLSPRQLIQPALPPMLHEILSGNALEPNSLVLELTESTLMQDPDLALKVMHQIKATGIRLSIDDFGT
GYSSLSYLQRFPLDILKIDRGFIHEINRQPTNAAITTAIIQMGHKLGLSLIGEGVETLAERKFLLDHQCDGIQGYLISPP
LPAAELLKYFPE
>Mature_571_residues
PKILIIEDEPQIRDIIQEILECEGYRTLEADNGLTGLQLAQQSPPDLIVCDVMMPELDGFDVLKGLRANPGIGSIPMIFL
TAKTDRASVRKGMNLGADDYITKPFTHLELLSAIDARLKKQALVTQQYTQTIQGLEAGLNALTYYDHLTQLPNRRLLEEQ
FQHIQAEKQIADTLDALVLVGIDRFEWIKSTLGAAFSDQLVQAITQQLSAHRYMGNYAMAMVARIEADQFAIIPRNIKSR
PDLDQFAKQILDILATPFYVVDQELCITPSIGMTCYPKGSTDIGTLISNAEIAMYQSKQQVGPSAEFYLPTMRSQCSQTL
TMAARLRHALDKNELRLYYQPHIDLQTSQVVGAEALLRWHHPEWGVLSPNVFIPIAEETDLILDIGEWVLRTSCLQVKRW
QQTCGRPLQMLVNLSPRQLIQPALPPMLHEILSGNALEPNSLVLELTESTLMQDPDLALKVMHQIKATGIRLSIDDFGTG
YSSLSYLQRFPLDILKIDRGFIHEINRQPTNAAITTAIIQMGHKLGLSLIGEGVETLAERKFLLDHQCDGIQGYLISPPL
PAAELLKYFPE

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=33.1797235023041, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI87081921, Length=466, Percent_Identity=30.2575107296137, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI226510982, Length=429, Percent_Identity=28.4382284382284, Blast_Score=176, Evalue=5e-45,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=30.0395256916996, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=32.2709163346614, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1787055, Length=250, Percent_Identity=32.8, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=33.469387755102, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=31.9672131147541, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=29.4117647058824, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=28.9256198347107, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1788849, Length=306, Percent_Identity=28.1045751633987, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=253, Percent_Identity=28.0632411067194, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1786784, Length=124, Percent_Identity=40.3225806451613, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1786599, Length=134, Percent_Identity=33.5820895522388, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1786911, Length=126, Percent_Identity=34.1269841269841, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788394, Length=134, Percent_Identity=32.8358208955224, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1788550, Length=152, Percent_Identity=32.8947368421053, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082012, Length=120, Percent_Identity=35, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1790860, Length=119, Percent_Identity=31.9327731092437, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790863, Length=110, Percent_Identity=35.4545454545455, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789809, Length=123, Percent_Identity=34.9593495934959, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI2367329, Length=128, Percent_Identity=37.5, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787410, Length=226, Percent_Identity=27.8761061946903, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788191, Length=123, Percent_Identity=26.8292682926829, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789650, Length=495, Percent_Identity=19.3939393939394, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787487, Length=110, Percent_Identity=32.7272727272727, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787229, Length=133, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1789402, Length=119, Percent_Identity=31.9327731092437, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790437, Length=104, Percent_Identity=33.6538461538462, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR000253
- InterPro:   IPR000014
- InterPro:   IPR008984 [H]

Pfam domain/function: PF00563 EAL; PF00498 FHA; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 64105; Mature: 63974

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKILIIEDEPQIRDIIQEILECEGYRTLEADNGLTGLQLAQQSPPDLIVCDVMMPELDG
CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCEEEEEEECCCCCC
FDVLKGLRANPGIGSIPMIFLTAKTDRASVRKGMNLGADDYITKPFTHLELLSAIDARLK
HHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
KQALVTQQYTQTIQGLEAGLNALTYYDHLTQLPNRRLLEEQFQHIQAEKQIADTLDALVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIDRFEWIKSTLGAAFSDQLVQAITQQLSAHRYMGNYAMAMVARIEADQFAIIPRNIKS
HCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
RPDLDQFAKQILDILATPFYVVDQELCITPSIGMTCYPKGSTDIGTLISNAEIAMYQSKQ
CCCHHHHHHHHHHHHCCCHHEECCCCEECCCCCCEECCCCCCCHHHHHCCCHHEEECCHH
QVGPSAEFYLPTMRSQCSQTLTMAARLRHALDKNELRLYYQPHIDLQTSQVVGAEALLRW
HCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
HHPEWGVLSPNVFIPIAEETDLILDIGEWVLRTSCLQVKRWQQTCGRPLQMLVNLSPRQL
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHH
IQPALPPMLHEILSGNALEPNSLVLELTESTLMQDPDLALKVMHQIKATGIRLSIDDFGT
HHHCCCHHHHHHHCCCCCCCCHHEEEEHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCC
GYSSLSYLQRFPLDILKIDRGFIHEINRQPTNAAITTAIIQMGHKLGLSLIGEGVETLAE
CHHHHHHHHHCCHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKFLLDHQCDGIQGYLISPPLPAAELLKYFPE
HHHHHHCCCCCCCCEEECCCCCHHHHHHHCCC
>Mature Secondary Structure 
PKILIIEDEPQIRDIIQEILECEGYRTLEADNGLTGLQLAQQSPPDLIVCDVMMPELDG
CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCEEEEEEECCCCCC
FDVLKGLRANPGIGSIPMIFLTAKTDRASVRKGMNLGADDYITKPFTHLELLSAIDARLK
HHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
KQALVTQQYTQTIQGLEAGLNALTYYDHLTQLPNRRLLEEQFQHIQAEKQIADTLDALVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIDRFEWIKSTLGAAFSDQLVQAITQQLSAHRYMGNYAMAMVARIEADQFAIIPRNIKS
HCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
RPDLDQFAKQILDILATPFYVVDQELCITPSIGMTCYPKGSTDIGTLISNAEIAMYQSKQ
CCCHHHHHHHHHHHHCCCHHEECCCCEECCCCCCEECCCCCCCHHHHHCCCHHEEECCHH
QVGPSAEFYLPTMRSQCSQTLTMAARLRHALDKNELRLYYQPHIDLQTSQVVGAEALLRW
HCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
HHPEWGVLSPNVFIPIAEETDLILDIGEWVLRTSCLQVKRWQQTCGRPLQMLVNLSPRQL
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHH
IQPALPPMLHEILSGNALEPNSLVLELTESTLMQDPDLALKVMHQIKATGIRLSIDDFGT
HHHCCCHHHHHHHCCCCCCCCHHEEEEHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCC
GYSSLSYLQRFPLDILKIDRGFIHEINRQPTNAAITTAIIQMGHKLGLSLIGEGVETLAE
CHHHHHHHHHCCHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKFLLDHQCDGIQGYLISPPLPAAELLKYFPE
HHHHHHCCCCCCCCEEECCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]