Click here to switch to the map view.

The map label for this gene is 158335422

Identifier: 158335422

GI number: 158335422

Start: 2268254

End: 2269363

Strand: Direct

Name: 158335422

Synonym: AM1_2269

Alternate gene names: NA

Gene position: 2268254-2269363 (Clockwise)

Preceding gene: 158335421

Following gene: 158335423

Centisome position: 34.88

GC content: 42.61

Gene sequence:

>1110_bases
GTGAAAAGTAGAGATAAAGTGCAGGTCACCAGTGATAGGGGGATGCTAAGACTCCGGTGGACATATATAGATAAACGTCA
GAGCCTCAACCTTGGATTAGAAAATACCCGGATTAATAGGACTTATGCCAATGGCATTGCTAGGCAAATAGCAGAAGATA
TTAGATGTGGTGAATACGATGTCACCAAAAATAAGTACAGGCCCAAGCTGATTGGTAATTCTGGCTTAAACTGCTCAGAG
TTATTTGATAAGTTCACAACCTACAAACAACACGATTTAGGCATCTCCCCTCGATCTGTTGAAACAAGATATATTCCGTT
ATCCAGGGCTTTAAACAAATGGTTAGATATGCCTGCTCATGAGGTCACTAAAGATCATGCTAGGCACTTCATGAGTATCC
AAAGTGAGCATGTCACCGCTGACACTGCTAAAGCCAGAATTGGATTATTGGGAAGCTGTTGGAAGTGGGCCATACAAGAA
GAACTATTAGCCACAGATAATCCTTGGGTTGGCTTGAGAGTAGCTCTTAAACCTCAACCAACTCAACGAGTGAAACCCTT
CAATCGAGAAGAAATCAAGGCTATCTTGTCCGAGTTTAGGAATAATCGCTATTACTCACATTATTCAGACTTTGTGATTT
TCCTATTTGGTGTAGGTTGTCGGTTTGGAGAAGCAGCAGGATTACTGTGGAAGCATATTGCAGATGATTTCCAAACAGTC
TGGATAGGAGAAAGCGTTTCTAGAGGCTATCGGAAAAGCACTAAGACTGGAAAGGCGAGGACGATAGTGCTATCCCCAAA
CGTACAATCGATGCTTAAAGCGCGATACGAAAGGCTGAAGCCTAATCTCGAAGATTTAGTTTTCCCTAGTCCACAAGGGT
TACCAATATGCGATCGCAGTTTTAGAAGACGGGCGTGGAAAACAGTTCTAATTAAATGTGGCATTGAATATCGAAAACCC
TATGCAATAAGGCATTCCGCAGTTAGCCATGCACTAGCTAGTGGTGCTGATCCAATCAGTGTTGCTGAGCAAAGTGGGCA
CGATAAGAGAGTAATGCTGGAAAGCTATGCCCATGTCATTCAACCCCAGAGCGTTTTTATAGAGTTTTAG

Upstream 100 bases:

>100_bases
TTCAGGTCTATTTTTGTGCAATCAATATGCATTGAAATAAGTCCGTTAAAGCTGGTTAGTCGTTTAGTTGGCCGGATAGA
TTGGCCGGAAGGATTAACCT

Downstream 100 bases:

>100_bases
TAATGGAAAGTGAATTAGAAAATATTATTTGCCAGAGGATCCCCTATAAGGGTTGGATGGCGATTAACTACATGGGTGTC
ACATTAGAGCCTGCGATAAT

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MKSRDKVQVTSDRGMLRLRWTYIDKRQSLNLGLENTRINRTYANGIARQIAEDIRCGEYDVTKNKYRPKLIGNSGLNCSE
LFDKFTTYKQHDLGISPRSVETRYIPLSRALNKWLDMPAHEVTKDHARHFMSIQSEHVTADTAKARIGLLGSCWKWAIQE
ELLATDNPWVGLRVALKPQPTQRVKPFNREEIKAILSEFRNNRYYSHYSDFVIFLFGVGCRFGEAAGLLWKHIADDFQTV
WIGESVSRGYRKSTKTGKARTIVLSPNVQSMLKARYERLKPNLEDLVFPSPQGLPICDRSFRRRAWKTVLIKCGIEYRKP
YAIRHSAVSHALASGADPISVAEQSGHDKRVMLESYAHVIQPQSVFIEF

Sequences:

>Translated_369_residues
MKSRDKVQVTSDRGMLRLRWTYIDKRQSLNLGLENTRINRTYANGIARQIAEDIRCGEYDVTKNKYRPKLIGNSGLNCSE
LFDKFTTYKQHDLGISPRSVETRYIPLSRALNKWLDMPAHEVTKDHARHFMSIQSEHVTADTAKARIGLLGSCWKWAIQE
ELLATDNPWVGLRVALKPQPTQRVKPFNREEIKAILSEFRNNRYYSHYSDFVIFLFGVGCRFGEAAGLLWKHIADDFQTV
WIGESVSRGYRKSTKTGKARTIVLSPNVQSMLKARYERLKPNLEDLVFPSPQGLPICDRSFRRRAWKTVLIKCGIEYRKP
YAIRHSAVSHALASGADPISVAEQSGHDKRVMLESYAHVIQPQSVFIEF
>Mature_369_residues
MKSRDKVQVTSDRGMLRLRWTYIDKRQSLNLGLENTRINRTYANGIARQIAEDIRCGEYDVTKNKYRPKLIGNSGLNCSE
LFDKFTTYKQHDLGISPRSVETRYIPLSRALNKWLDMPAHEVTKDHARHFMSIQSEHVTADTAKARIGLLGSCWKWAIQE
ELLATDNPWVGLRVALKPQPTQRVKPFNREEIKAILSEFRNNRYYSHYSDFVIFLFGVGCRFGEAAGLLWKHIADDFQTV
WIGESVSRGYRKSTKTGKARTIVLSPNVQSMLKARYERLKPNLEDLVFPSPQGLPICDRSFRRRAWKTVLIKCGIEYRKP
YAIRHSAVSHALASGADPISVAEQSGHDKRVMLESYAHVIQPQSVFIEF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42434; Mature: 42434

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSRDKVQVTSDRGMLRLRWTYIDKRQSLNLGLENTRINRTYANGIARQIAEDIRCGEYD
CCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
VTKNKYRPKLIGNSGLNCSELFDKFTTYKQHDLGISPRSVETRYIPLSRALNKWLDMPAH
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHCCCHH
EVTKDHARHFMSIQSEHVTADTAKARIGLLGSCWKWAIQEELLATDNPWVGLRVALKPQP
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
TQRVKPFNREEIKAILSEFRNNRYYSHYSDFVIFLFGVGCRFGEAAGLLWKHIADDFQTV
HHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEE
WIGESVSRGYRKSTKTGKARTIVLSPNVQSMLKARYERLKPNLEDLVFPSPQGLPICDRS
EECHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHH
FRRRAWKTVLIKCGIEYRKPYAIRHSAVSHALASGADPISVAEQSGHDKRVMLESYAHVI
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHH
QPQSVFIEF
CCCCEEEEC
>Mature Secondary Structure
MKSRDKVQVTSDRGMLRLRWTYIDKRQSLNLGLENTRINRTYANGIARQIAEDIRCGEYD
CCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
VTKNKYRPKLIGNSGLNCSELFDKFTTYKQHDLGISPRSVETRYIPLSRALNKWLDMPAH
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHCCCHH
EVTKDHARHFMSIQSEHVTADTAKARIGLLGSCWKWAIQEELLATDNPWVGLRVALKPQP
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
TQRVKPFNREEIKAILSEFRNNRYYSHYSDFVIFLFGVGCRFGEAAGLLWKHIADDFQTV
HHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEE
WIGESVSRGYRKSTKTGKARTIVLSPNVQSMLKARYERLKPNLEDLVFPSPQGLPICDRS
EECHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHH
FRRRAWKTVLIKCGIEYRKPYAIRHSAVSHALASGADPISVAEQSGHDKRVMLESYAHVI
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHH
QPQSVFIEF
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]